Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LFL98_RS09060 Genome accession   NZ_CP110365
Coordinates   1729939..1731189 (+) Length   416 a.a.
NCBI ID   WP_033883732.1    Uniprot ID   -
Organism   Bacillus subtilis strain HY2-62     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1724939..1736189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFL98_RS09030 (LFL98_09035) ymfH 1725029..1726315 (+) 1287 WP_277737150.1 pitrilysin family protein -
  LFL98_RS09035 (LFL98_09040) efpI 1726370..1727098 (+) 729 WP_003244676.1 EF-P-5 aminopentanone reductase -
  LFL98_RS09040 (LFL98_09045) ymfJ 1727179..1727436 (+) 258 WP_003245199.1 DUF3243 domain-containing protein -
  LFL98_RS09045 (LFL98_09050) - 1727566..1728357 (+) 792 WP_003220998.1 YmfK family protein -
  LFL98_RS09050 (LFL98_09055) rodZ 1728424..1729290 (+) 867 WP_010886511.1 cell shape determination protein RodZ -
  LFL98_RS09055 (LFL98_09060) pgsA 1729340..1729921 (+) 582 WP_003244753.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LFL98_RS09060 (LFL98_09065) cinA 1729939..1731189 (+) 1251 WP_033883732.1 competence/damage-inducible protein A Machinery gene
  LFL98_RS09065 (LFL98_09070) recA 1731362..1732408 (+) 1047 WP_003245789.1 recombinase RecA Machinery gene
  LFL98_RS09070 (LFL98_09075) pbpX 1732576..1733751 (+) 1176 WP_277737151.1 serine hydrolase domain-containing protein -
  LFL98_RS09075 (LFL98_09080) rny 1734027..1735589 (+) 1563 WP_003221010.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45538.79 Da        Isoelectric Point: 5.1539

>NTDB_id=754618 LFL98_RS09060 WP_033883732.1 1729939..1731189(+) (cinA) [Bacillus subtilis strain HY2-62]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHESRYYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSIACKEKGITISAAESFTGGLFSEWLTDHSGASKLFAGGVVCYTNDVKQNVLG
VKKETLDRFGAVSEECASELAKGVQKLTGSDIGISFTGVAGPDAQEGHEPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
GAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=754618 LFL98_RS09060 WP_033883732.1 1729939..1731189(+) (cinA) [Bacillus subtilis strain HY2-62]
ATGGAATTTCCAAAAAAAGCAGAAATAATTGCAGTCGGTTCAGAGCTGCTGCTTGGCCAAATCGCCAATACAAATGCTCA
ATTTATCAGCAAACAGCTCGCTGAAATCGGGGTCAACGTATTTTATCATACAGCGGTCGGAGATAACCCGGAGCGGCTGA
AGCAGGTCATCCGCATTGCTGAAGAACGCTCTGACTTCATTATTTTTTCAGGAGGGCTTGGACCCACAAAAGATGATCTG
ACGAAAGAAACGATTGCAAATACGCTGGGACGTCCGCTTGTGTTAAATGATGAGGCATTCCAATCCATTGAGGACTATTT
CAAACGAACAAAACGCACGATGTCACCTAATAACCGAAAACAGGCGCTTGTGATCGAAGGCTCTGACGTGCTGGCGAATC
ACTTTGGAATGGCCCCGGGAATGCTCACAGAGCATGAATCGCGCTATTATATGCTTCTTCCTGGACCGCCGAGCGAATTG
CGTCCAATGTTTGAAAACGAGGCAAAGCCTCTTCTGCTGAAAAAGATGGGTTCAAATGAAAAAATTGTGTCAACTGTTCT
TCGCTTTTTCGGTATCGGTGAATCTCAGCTTGAAGCCGATTTGGAAGATATTATTGATGCACAAACCAATCCGACAATTG
CGCCTTTGGCGGCTGATGGAGAGGTGACGCTGCGTCTGACAGCCAAACACGCCGATGAAAAGGAAACAGAGCGTCTGTTA
AAAGAAACAGAGGCCGTTATCTTAGAGCGTGTCGGTGAATTTTTCTATGGTTACGATGATACTTCTCTTGTAAAAGAGCT
ATCTATAGCATGTAAGGAAAAAGGCATAACAATTTCTGCGGCAGAAAGCTTTACCGGAGGGCTGTTTTCTGAATGGCTGA
CGGATCATAGCGGTGCCTCAAAATTATTTGCCGGGGGCGTTGTTTGCTATACAAACGACGTGAAGCAGAATGTGCTTGGT
GTCAAGAAGGAAACATTAGATCGTTTTGGGGCGGTCAGCGAGGAGTGCGCATCCGAACTGGCTAAGGGTGTTCAAAAACT
CACTGGCAGCGATATCGGCATTAGCTTTACTGGTGTAGCAGGACCTGATGCTCAAGAAGGGCATGAGCCTGGGCATGTGT
TTATCGGCATTTCCGCAAATGGTAAAGAAGAGGTTCACGAGTTTCACTTTGCGGGCTCCAGAACGGGGATCAGAAAACGC
GGCGCTAAATACGGCTGCCATTTAATCTTAAAGCTTTTAGAGCAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(262-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

99.76

100

0.998
  cinA Streptococcus mitis NCTC 12261

45.933

100

0.462
  cinA Streptococcus mitis SK321

45.933

100

0.462
  cinA Streptococcus pneumoniae TIGR4

45.694

100

0.459
  cinA Streptococcus pneumoniae Rx1

45.455

100

0.457
  cinA Streptococcus pneumoniae R6

45.455

100

0.457
  cinA Streptococcus mutans UA159

46.005

99.279

0.457
  cinA Streptococcus pneumoniae D39

45.215

100

0.454
  cinA Streptococcus suis isolate S10

41.645

90.625

0.377