Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PALA40_RS27160 Genome accession   NZ_CP110349
Coordinates   5761594..5762811 (+) Length   405 a.a.
NCBI ID   WP_269973008.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA40     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5756594..5767811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA40_RS27135 (PALA40_05353) nadC 5756705..5757553 (+) 849 WP_003122081.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PALA40_RS27145 (PALA40_05355) - 5757734..5759119 (-) 1386 WP_003122080.1 O-antigen ligase family protein -
  PALA40_RS27150 (PALA40_05356) - 5759195..5759659 (-) 465 WP_003122079.1 pilin -
  PALA40_RS27155 (PALA40_05357) pilB 5759890..5761590 (+) 1701 WP_003122078.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PALA40_RS27160 (PALA40_05358) pilC 5761594..5762811 (+) 1218 WP_269973008.1 type II secretion system F family protein Machinery gene
  PALA40_RS27165 (PALA40_05359) pilD 5762812..5763684 (+) 873 WP_016852118.1 type IV prepilin peptidase/methyltransferase PilD Machinery gene
  PALA40_RS27170 (PALA40_05360) coaE 5763681..5764292 (+) 612 WP_003112838.1 dephospho-CoA kinase -
  PALA40_RS27175 (PALA40_05361) yacG 5764289..5764489 (+) 201 WP_003094656.1 DNA gyrase inhibitor YacG -
  PALA40_RS27180 (PALA40_05362) - 5764526..5764735 (-) 210 WP_003094660.1 hypothetical protein -
  PALA40_RS27185 (PALA40_05363) - 5764841..5765530 (-) 690 WP_003103868.1 energy-coupling factor ABC transporter permease -
  PALA40_RS27190 (PALA40_05364) - 5765527..5765997 (-) 471 WP_003094664.1 hypothetical protein -
  PALA40_RS27195 (PALA40_05365) - 5765994..5766419 (-) 426 WP_003116252.1 GNAT family N-acetyltransferase -
  PALA40_RS27200 (PALA40_05366) - 5766552..5767181 (+) 630 WP_003094668.1 DUF1780 domain-containing protein -
  PALA40_RS27205 (PALA40_05367) - 5767178..5767627 (+) 450 WP_003094670.1 MOSC domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44044.89 Da        Isoelectric Point: 9.8957

>NTDB_id=754340 PALA40_RS27160 WP_269973008.1 5761594..5762811(+) (pilC) [Pseudomonas aeruginosa strain PALA40]
MADKALKTSVFVWEGTDKKGTKVKGELSSQNPTLVKAQLRKQGITPVKVRKKGISLLGAGKKIKPMDIALFTRQMSTMMA
AGVPLLQSFDIISEGFDNPNMRKLVEEIKQEVAGGNSLANSLRKKPQYFDSLYCNLVDAGEQSGALETLLDRVATYKEKT
EALKAKIKKAMTYPIAVIVVAIIVSAILLIKVVPQFQSVFEGFGAELPAFTMMVINISNVLQEWWLLVLLMMGGAGFLLN
HAYKRSEKFRDATDRTVLKLPIVGAILYKSAVARYARTLSTTFAAGVPLVEALDSVSGATGNVVFRDAVGKIKQDVSTGM
QRNFSMRTTNIFPSMAIQMTAIGEESGALDDMLAKVAGFYEQEVDNAVDNLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGNVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=754340 PALA40_RS27160 WP_269973008.1 5761594..5762811(+) (pilC) [Pseudomonas aeruginosa strain PALA40]
ATGGCGGACAAAGCGTTAAAGACCAGTGTCTTCGTATGGGAAGGCACTGACAAGAAAGGCACCAAGGTCAAGGGCGAGCT
GTCCAGCCAGAACCCGACCCTGGTCAAGGCGCAACTGCGCAAGCAGGGCATCACGCCGGTCAAGGTCCGCAAGAAAGGCA
TCTCCCTGCTGGGGGCGGGGAAGAAGATCAAGCCTATGGACATCGCCCTGTTCACCCGCCAGATGTCCACCATGATGGCC
GCCGGCGTGCCGCTGCTGCAGTCGTTCGACATCATCAGCGAAGGCTTCGACAATCCGAACATGCGCAAGCTGGTGGAGGA
GATCAAGCAGGAAGTCGCCGGCGGCAACAGCCTGGCCAACTCGCTGCGCAAGAAGCCGCAGTACTTCGACTCGCTCTACT
GCAACCTGGTGGACGCCGGCGAACAATCCGGCGCCCTGGAAACCCTGCTCGACCGGGTCGCCACCTACAAGGAAAAGACC
GAGGCGCTGAAGGCCAAGATCAAGAAGGCCATGACCTACCCGATCGCGGTGATCGTCGTCGCCATCATCGTTTCGGCGAT
CCTACTGATCAAGGTGGTGCCGCAGTTCCAGTCGGTGTTCGAGGGCTTCGGCGCCGAACTGCCAGCCTTCACCATGATGG
TCATCAACATTTCCAACGTACTCCAGGAATGGTGGCTCCTGGTACTGCTGATGATGGGCGGCGCCGGCTTCCTGCTGAAC
CACGCCTACAAGCGTTCGGAGAAGTTCCGCGACGCCACCGACCGCACGGTACTGAAGCTGCCTATCGTCGGCGCCATCCT
CTACAAATCCGCCGTGGCACGCTACGCGCGGACGCTGTCGACCACCTTCGCCGCCGGCGTGCCATTGGTGGAAGCCCTCG
ACTCGGTTTCCGGCGCCACCGGCAACGTGGTGTTCAGGGACGCGGTGGGCAAGATCAAGCAGGACGTGTCCACCGGCATG
CAGCGGAACTTCTCCATGCGCACCACCAACATCTTCCCCAGCATGGCCATCCAGATGACCGCCATCGGCGAGGAGTCGGG
CGCGCTGGACGACATGCTGGCCAAGGTCGCTGGCTTCTACGAGCAGGAAGTGGATAATGCCGTGGACAACCTGACCGCCC
TGATGGAACCGATGATCATGGCGGTCCTCGGGGTCCTGGTCGGTGGCCTGATCATCGCCATGTACCTGCCGATCTTCCAG
CTGGGCAACGTCGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

78.519

100

0.785
  pilC Acinetobacter baylyi ADP1

60.784

100

0.612
  pilC Acinetobacter baumannii D1279779

60.149

99.753

0.6
  pilC Legionella pneumophila strain ERS1305867

54.293

97.778

0.531
  pilG Neisseria gonorrhoeae MS11

46.04

99.753

0.459
  pilG Neisseria meningitidis 44/76-A

45.522

99.259

0.452
  pilC Vibrio cholerae strain A1552

41.481

100

0.415
  pilC Vibrio campbellii strain DS40M4

40.648

99.012

0.402
  pilC Thermus thermophilus HB27

37.905

99.012

0.375