Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   UKS_RS09675 Genome accession   NZ_AP021887
Coordinates   1941549..1942730 (+) Length   393 a.a.
NCBI ID   WP_156013000.1    Uniprot ID   A0A6H3SF62
Organism   Streptococcus sp. 116-D4     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1936549..1947730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UKS_RS09635 (UKS_18700) - 1937597..1938139 (+) 543 WP_156012995.1 TetR-like C-terminal domain-containing protein -
  UKS_RS09650 (UKS_18710) comE 1938382..1939134 (-) 753 WP_000866062.1 competence system response regulator transcription factor ComE Regulator
  UKS_RS09655 (UKS_18720) comD/comD1 1939131..1940456 (-) 1326 WP_156012996.1 competence system sensor histidine kinase ComD Regulator
  UKS_RS09660 (UKS_18730) comC 1940468..1940599 (-) 132 WP_156012998.1 competence-stimulating peptide ComC Regulator
  UKS_RS09670 (UKS_18740) rlmH 1940882..1941361 (-) 480 WP_049496558.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  UKS_RS09675 (UKS_18750) htrA 1941549..1942730 (+) 1182 WP_156013000.1 S1C family serine protease Regulator
  UKS_RS09680 (UKS_18760) spo0J 1942788..1943546 (+) 759 WP_156013002.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 393 a.a.        Molecular weight: 41684.50 Da        Isoelectric Point: 6.1486

>NTDB_id=75395 UKS_RS09675 WP_156013000.1 1941549..1942730(+) (htrA) [Streptococcus sp. 116-D4]
MKHLKTFYKKWFQLLVVIVISFISGALGSFSITQLTQKSGASSSNNNSTITQTAYKNENSTTQAVNKVKDAVVSVITYSS
NRQNSVFGNDDTDTDSQQISSEGSGVIYKKNDKEAYIVTNNHVINGASKVDIRLSDGTKVPGEIVGADTFSDIAVVKISS
EKVTTVAEFGDSSKLTVGETAIAIGSPLGSEYANTVTQGIVSSLNRNVSLKSEDGQAISTKAIQTDTAINPGNSGGPLIN
IQGQVIGITSSKIATNGGTSVEGLGFAIPANDAINIIEQLEKNGKVTRPALGIQMVNLSNINTSDIRRLNIPSNVTSGVV
VRSVQSNMPASGHLEKYDVITKVDDKEIASSTDLQSALYNHSIGDTIKITYYRNGKEETTSIKLDKSSGDLES

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=75395 UKS_RS09675 WP_156013000.1 1941549..1942730(+) (htrA) [Streptococcus sp. 116-D4]
ATGAAACATCTAAAAACATTTTACAAAAAATGGTTTCAATTACTAGTCGTTATCGTCATTAGCTTTATTAGCGGTGCCTT
GGGTAGTTTTTCAATAACTCAACTAACTCAAAAAAGTGGTGCAAGTAGCTCTAACAACAATAGTACTATTACACAAACTG
CCTATAAAAACGAAAATTCAACAACACAGGCTGTTAACAAAGTAAAAGATGCTGTTGTTTCTGTTATTACTTATTCGTCA
AACAGACAAAATAGCGTATTTGGTAATGATGATACTGACACTGATTCTCAGCAAATCTCTAGTGAAGGATCTGGGGTTAT
TTATAAAAAGAATGATAAAGAAGCTTATATTGTCACCAACAATCACGTTATAAATGGCGCCAGCAAAGTAGATATTCGTT
TGTCAGATGGAACTAAAGTACCCGGAGAAATTGTCGGAGCGGACACTTTCTCTGATATTGCTGTCGTCAAAATCTCTTCA
GAAAAAGTGACAACAGTAGCTGAGTTTGGTGATTCTAGCAAGTTAACCGTAGGAGAAACTGCTATTGCCATCGGTAGCCC
GTTAGGTTCTGAATATGCTAATACTGTCACTCAAGGTATCGTATCTAGTCTCAATCGAAATGTATCTTTAAAATCTGAAG
ATGGGCAAGCCATTTCTACAAAAGCCATCCAAACTGATACTGCTATTAACCCAGGTAACTCTGGTGGCCCACTGATCAAT
ATTCAAGGACAGGTTATCGGAATTACCTCAAGTAAAATTGCCACAAATGGAGGAACATCTGTAGAAGGTCTTGGTTTTGC
AATCCCTGCCAATGATGCTATCAATATTATTGAACAGTTAGAAAAGAACGGAAAAGTGACTCGTCCAGCATTGGGAATTC
AAATGGTCAATCTCTCAAATATTAATACAAGTGATATTAGAAGACTGAATATTCCAAGCAATGTAACATCTGGTGTAGTT
GTTCGTTCTGTGCAGAGTAATATGCCTGCCAGTGGTCACCTTGAAAAATACGATGTTATTACAAAAGTAGATGACAAAGA
GATTGCTTCATCAACAGACTTACAAAGTGCTCTTTACAATCATTCTATCGGAGATACCATTAAGATAACTTACTATCGTA
ACGGTAAAGAAGAAACTACATCTATTAAACTTGACAAGAGTTCAGGTGATTTAGAATCTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A6H3SF62

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mitis NCTC 12261

97.964

100

0.98

  htrA Streptococcus pneumoniae Rx1

96.947

100

0.969

  htrA Streptococcus pneumoniae D39

96.947

100

0.969

  htrA Streptococcus pneumoniae R6

96.947

100

0.969

  htrA Streptococcus pneumoniae TIGR4

96.947

100

0.969

  htrA Streptococcus gordonii str. Challis substr. CH1

66.414

100

0.669

  htrA Streptococcus mutans UA159

54.569

100

0.547


Multiple sequence alignment