Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   OMK57_RS09385 Genome accession   NZ_CP110264
Coordinates   1835116..1836366 (+) Length   416 a.a.
NCBI ID   WP_069486544.1    Uniprot ID   -
Organism   Bacillus halotolerans strain HMB20199     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1830116..1841366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMK57_RS09355 (OMK57_09355) yfmH 1830208..1831494 (+) 1287 WP_059352923.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  OMK57_RS09360 (OMK57_09360) ymfI 1831547..1832275 (+) 729 WP_069486543.1 elongation factor P 5-aminopentanone reductase -
  OMK57_RS09365 (OMK57_09365) - 1832355..1832612 (+) 258 WP_044155842.1 DUF3243 domain-containing protein -
  OMK57_RS09370 (OMK57_09370) - 1832742..1833533 (+) 792 WP_024121452.1 YmfK family protein -
  OMK57_RS09375 (OMK57_09375) - 1833600..1834466 (+) 867 WP_229043071.1 RodZ family helix-turn-helix domain-containing protein -
  OMK57_RS09380 (OMK57_09380) pgsA 1834516..1835097 (+) 582 WP_010334305.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  OMK57_RS09385 (OMK57_09385) cinA 1835116..1836366 (+) 1251 WP_069486544.1 competence/damage-inducible protein A Machinery gene
  OMK57_RS09390 (OMK57_09390) recA 1836539..1837585 (+) 1047 WP_010334307.1 recombinase RecA Machinery gene
  OMK57_RS09395 (OMK57_09395) - 1837764..1838942 (+) 1179 WP_069486545.1 serine hydrolase -
  OMK57_RS09400 (OMK57_09400) rny 1839229..1840791 (+) 1563 WP_010334309.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45398.69 Da        Isoelectric Point: 5.1450

>NTDB_id=753560 OMK57_RS09385 WP_069486544.1 1835116..1836366(+) (cinA) [Bacillus halotolerans strain HMB20199]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANVLGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHDSRFYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDATSLVKELSKACKEKGITLSAAESFTGGLFSEWLTDLSGASALFSGGVVCYSNEVKQNVLG
VKKETLDRFGAVSEECASELAKGVQQLTGSDIGISFTGVAGPDTQEGHAPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
AAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=753560 OMK57_RS09385 WP_069486544.1 1835116..1836366(+) (cinA) [Bacillus halotolerans strain HMB20199]
ATGGAATTTCCAAAAAAAGCAGAGATTATTGCAGTCGGTTCAGAGCTCTTACTTGGTCAGATTGCGAATACAAATGCTCA
ATTTATCAGCAAACAGCTGGCAGAAATCGGAGTAAACGTATTTTACCATACAGCAGTCGGTGATAATCCGGAGCGGCTGA
AGCAGGTCATCCGTATTGCTGAAGAGCGCTCTGATTTTATTATTTTTTCAGGAGGGCTCGGACCGACAAAAGATGATTTA
ACAAAAGAAACGATAGCAAATGTGCTGGGACGCCCGCTCGTTTTAAATGATGAGGCGTTTCAATCCATTGAGGATTATTT
CAAACGAACAAAACGCACGATGTCACCTAATAACCGAAAACAGGCGCTTGTCATCGAAGGATCTGACGTACTGGCGAATC
ACTTTGGAATGGCGCCGGGAATGCTTACAGAGCATGATTCGCGCTTTTATATGCTTCTTCCCGGGCCGCCGAGCGAATTG
CGTCCGATGTTTGAAAATGAGGCAAAACCGCTTCTTCTTAAAAAGATGGGCTCCAATGAAAAAATTGTATCAACTGTTCT
TCGCTTTTTCGGTATCGGCGAGTCTCAGCTTGAAGCTGATTTAGAAGATATCATTGATGCACAGACGAACCCGACGATCG
CTCCGTTGGCAGCGGACGGAGAGGTGACGCTTCGCCTGACAGCAAAACATGCCGATGAAAAAGAAACAGAGCGTTTGTTA
AAAGAAACAGAAGCCGTTATTTTAGAACGTGTCGGTGAATTTTTCTATGGCTACGACGCTACATCGCTTGTGAAAGAGCT
ATCTAAAGCATGTAAGGAAAAAGGCATCACGCTTTCTGCCGCAGAAAGCTTTACCGGCGGGCTGTTTTCTGAATGGCTGA
CAGACCTTAGCGGCGCTTCAGCATTGTTTTCCGGCGGCGTTGTTTGCTATTCAAACGAAGTGAAGCAAAATGTGCTCGGC
GTCAAAAAGGAAACATTGGACCGTTTCGGAGCAGTCAGCGAGGAATGCGCATCTGAGCTCGCAAAGGGTGTTCAGCAGCT
CACTGGAAGCGATATTGGCATTAGCTTTACCGGTGTTGCCGGCCCTGATACTCAAGAAGGCCATGCACCTGGACATGTAT
TTATCGGTATTTCTGCAAACGGAAAAGAAGAGGTTCACGAGTTTCACTTTGCAGGCTCCAGAACAGGAATCAGAAAACGT
GCTGCTAAATATGGCTGCCATTTAATTTTAAAACTGTTAGAGCAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(261-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

96.154

100

0.962
  cinA Streptococcus mitis SK321

46.651

100

0.469
  cinA Streptococcus mitis NCTC 12261

46.651

100

0.469
  cinA Streptococcus mutans UA159

46.973

99.279

0.466
  cinA Streptococcus pneumoniae TIGR4

46.411

100

0.466
  cinA Streptococcus pneumoniae Rx1

46.172

100

0.464
  cinA Streptococcus pneumoniae R6

46.172

100

0.464
  cinA Streptococcus pneumoniae D39

45.933

100

0.462
  cinA Streptococcus suis isolate S10

41.91

90.625

0.38