Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   QHG49_RS23880 Genome accession   NZ_CP123923
Coordinates   5419718..5421451 (-) Length   577 a.a.
NCBI ID   WP_159701162.1    Uniprot ID   -
Organism   Streptomyces sp. WP-1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5414718..5426451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QHG49_RS23870 (QHG49_23875) rpoS 5416611..5417726 (+) 1116 WP_236576274.1 RNA polymerase sigma factor Regulator
  QHG49_RS23875 (QHG49_23880) rcrQ 5417790..5419718 (-) 1929 WP_145488335.1 ABC transporter ATP-binding protein Regulator
  QHG49_RS23880 (QHG49_23885) rcrP 5419718..5421451 (-) 1734 WP_159701162.1 ABC transporter ATP-binding protein Regulator
  QHG49_RS23885 (QHG49_23890) - 5421616..5423064 (-) 1449 WP_301491206.1 FGGY-family carbohydrate kinase -
  QHG49_RS23890 (QHG49_23895) - 5423092..5423397 (-) 306 WP_145488340.1 YtxH domain-containing protein -
  QHG49_RS23910 (QHG49_23915) - 5424552..5424689 (+) 138 WP_301491207.1 hypothetical protein -
  QHG49_RS23915 (QHG49_23920) - 5424905..5425144 (+) 240 WP_145488343.1 DUF397 domain-containing protein -
  QHG49_RS23920 (QHG49_23925) - 5425261..5426247 (+) 987 WP_236576669.1 Scr1 family TA system antitoxin-like transcriptional regulator -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62856.19 Da        Isoelectric Point: 6.4052

>NTDB_id=753087 QHG49_RS23880 WP_159701162.1 5419718..5421451(-) (rcrP) [Streptomyces sp. WP-1]
MLIRLLRTYLRPYKKPITLQVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILSFGALMIGISLVQVVCNIGAVYLGA
RTASALGRDMRAAVFDRVQSFSSREVGHFGAPSLITRTTNDVQQIQMLVLMTFTLMVSAPIMCVGGIVLALGLDVPLSGV
LIAVVPVLAVCVTLIVRRLRPLFRTMQTRLDKVNRVLREQITGNRVIRAFVRDEYEQARFGRVNGELTEMQLATGRLLSL
MFPMVMTVVNVSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERVQEVMDTGSSVLP
PLAPVTELRRHGHLEIRGAGFRYPGAEEPVLRSVQLEARPGETTAVIGSTGSGKSTLLGLVPRLFDATEGEVLVNGVDVR
EVDPALLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAEEFVTRLEGGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALAQETAEATVVIVAQRVATIRDADRIIVLDEGRVVGSGRHQELMAGN
DTYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=753087 QHG49_RS23880 WP_159701162.1 5419718..5421451(-) (rcrP) [Streptomyces sp. WP-1]
GTGCTCATACGACTTCTACGGACCTATCTCAGGCCCTACAAGAAACCCATCACTCTTCAGGTGCTGCTCCAGTTCCTGCA
GACCTGCGCCACCCTGTACCTGCCCACCCTGAACGCCCACATCATCGACAACGGCGTCGTGAAGGGCGACACGGGCTACA
TCCTGTCCTTCGGCGCCCTGATGATCGGCATCTCGCTGGTGCAGGTCGTGTGCAACATCGGCGCCGTCTACCTGGGCGCC
CGCACCGCCTCGGCGCTCGGCCGGGACATGCGCGCCGCCGTCTTCGACCGGGTGCAGTCCTTCTCCTCCCGTGAGGTGGG
TCACTTCGGCGCGCCCTCGCTCATCACGCGCACCACGAACGACGTCCAGCAGATCCAGATGCTGGTCCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCCATCATGTGCGTCGGCGGCATCGTGCTGGCGCTCGGCCTGGACGTGCCGCTGTCCGGGGTG
CTGATCGCGGTCGTCCCGGTGCTGGCCGTCTGCGTGACGCTGATCGTGCGCAGGCTGCGGCCGCTGTTCCGCACCATGCA
GACCCGCCTGGACAAGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGCGCCTTCGTCCGCGACG
AGTACGAGCAGGCCCGCTTCGGCCGGGTCAACGGCGAGCTGACCGAGATGCAGCTGGCCACCGGGCGGCTGCTGTCGCTG
ATGTTCCCGATGGTGATGACCGTGGTGAACGTGTCCTCCATCGCGGTGGTGTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGGATGCAGATCGGCGACCTGACGGCGTTCCTCGCCTATCTGATGCAGATCGTGATGTCCGTCATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGTGTCCAGGAGGTCATGGACACCGGCTCCAGCGTGCTGCCG
CCGCTCGCGCCGGTCACCGAGCTGCGCCGGCACGGGCATCTGGAGATCCGCGGGGCCGGCTTCCGCTATCCGGGCGCCGA
GGAGCCGGTGCTGCGCTCCGTGCAGCTGGAGGCGCGGCCCGGCGAGACCACGGCCGTGATCGGGTCCACCGGCAGCGGCA
AGTCCACCCTGCTCGGGCTGGTCCCGCGCTTGTTCGACGCCACCGAGGGCGAGGTCCTGGTGAACGGCGTGGACGTCCGC
GAGGTCGACCCGGCGCTGCTGGCACGGACGGTCGGACTCGTGCCGCAGAAGCCGTACCTCTTCGCGGGCACCGTCGCCAC
GAACCTGCGCTACGGCAATCCGGACGCCACCGACGAGGAGCTGTGGCACGCGCTTGAGGTGGCGCAGGCCGAGGAGTTCG
TGACCAGGCTGGAAGGCGGCCTGGACGCGCCGATCGCCCAGGGCGGCACCAATGTGTCGGGCGGCCAGCGCCAGCGGCTC
GCGATCGCGCGCACGCTCGTGCAGCGCCCGGAGATCTACCTGTTCGACGACTCCTTCTCCGCGCTCGACTACGCCACCGA
CGCGGCCCTGCGCGCCGCGCTGGCGCAGGAGACCGCCGAGGCGACCGTCGTCATCGTCGCCCAGCGGGTGGCGACCATCC
GGGACGCCGACCGGATCATCGTCCTCGACGAGGGCCGGGTGGTCGGCTCCGGCCGGCACCAGGAGCTGATGGCGGGCAAC
GACACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.894

97.747

0.39