Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   OKV75_RS09195 Genome accession   NZ_CP110109
Coordinates   1847955..1849193 (-) Length   412 a.a.
NCBI ID   WP_000990700.1    Uniprot ID   A0A9X6TVC6
Organism   Bacillus thuringiensis strain TG-5     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1842955..1854193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKV75_RS09175 spoVS 1843364..1843624 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  OKV75_RS09180 - 1843774..1844568 (-) 795 WP_264648077.1 TIGR00282 family metallophosphoesterase -
  OKV75_RS09185 rny 1844731..1846296 (-) 1566 WP_000099769.1 ribonuclease Y -
  OKV75_RS09190 recA 1846779..1847810 (-) 1032 WP_001283854.1 recombinase RecA Machinery gene
  OKV75_RS09195 cinA 1847955..1849193 (-) 1239 WP_000990700.1 competence/damage-inducible protein A Machinery gene
  OKV75_RS09200 pgsA 1849214..1849792 (-) 579 WP_001052977.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  OKV75_RS09205 - 1849856..1850767 (-) 912 WP_000137474.1 helix-turn-helix domain-containing protein -
  OKV75_RS09210 - 1850789..1851574 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  OKV75_RS09215 - 1851713..1851961 (-) 249 WP_000114444.1 DUF3243 domain-containing protein -
  OKV75_RS09220 ymfI 1852037..1852750 (-) 714 WP_000759626.1 elongation factor P 5-aminopentanone reductase -
  OKV75_RS09225 yfmH 1852851..1854137 (-) 1287 WP_000411277.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45409.76 Da        Isoelectric Point: 5.8780

>NTDB_id=752361 OKV75_RS09195 WP_000990700.1 1847955..1849193(-) (cinA) [Bacillus thuringiensis strain TG-5]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIEAAEERADILIFTGGLGPTKDDLTKET
IATSLDEKLVYDEKALDLISNYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGVNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVSEAEKLIQHVED
LILERVGEFFYGYDQEFLHYKAIELLKRKGLTLACAESLTGGLFGNQVTGNAGVSSVFKGGVICYHNDVKQHVLRVPEEV
LHTDGAVSKECARYLAENVKDLLKADIGISFTGVAGPDASEQKEPGTVFVGLAIKGEQTAVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=752361 OKV75_RS09195 WP_000990700.1 1847955..1849193(-) (cinA) [Bacillus thuringiensis strain TG-5]
ATGAATGCTGAGATTATTGCGGTTGGAACTGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTGGCTTCAATTGGAATTAACGTGTACTATCATACTGTTGTTGGTGATAATAATAAGCGACTGCAAAAGGCGATTG
AAGCTGCGGAAGAACGTGCTGATATCCTTATTTTTACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACG
ATAGCGACTAGTTTAGATGAAAAGCTTGTGTATGATGAAAAGGCATTAGACTTAATAAGTAATTACTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAAGCGCTCGTTTTAAATGGAGCAACAGTATTTGCAAATGACCACGGTATGG
CGCCGGGTATGGGGGTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGGCCGCCAAAAGAAATGAAACCAATGTAT
GTAAGTTACGTAGAGCCTTTTTTACGTAATTTTACAACAGGAGAAAACATTTATTCACGTGTGCTTCGTTTCTTCGGTAT
TGGGGAGTCCCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACAAACCCAACAATTGCCCCGCTAGCAAATG
ATGGAGAAGTGACATTACGTTTAACCGCTAAGCATCAAAATGTTAGCGAAGCGGAGAAACTAATTCAACATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGAATTTTTGCATTATAAGGCAATCGAGTTATTGAA
GAGAAAAGGGTTAACTTTAGCATGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACTGGAAATGCTGGTG
TTTCTTCTGTATTTAAGGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACGTGTGCCTGAAGAAGTA
TTGCATACTGATGGTGCAGTTAGTAAGGAATGTGCTCGTTATCTTGCTGAAAATGTTAAGGATTTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGGCCAGATGCTTCAGAACAGAAAGAGCCAGGAACAGTATTTGTTGGATTAGCGA
TTAAAGGTGAACAAACTGCAGTCTTTCCTCTTAATTTAAGTGGAAGTCGTCAACAAATTAGAGAACGATCAGCAAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.293

99.515

0.58
  cinA Streptococcus pneumoniae TIGR4

46.778

100

0.476
  cinA Streptococcus mitis SK321

46.539

100

0.473
  cinA Streptococcus pneumoniae Rx1

46.301

100

0.471
  cinA Streptococcus pneumoniae R6

46.301

100

0.471
  cinA Streptococcus pneumoniae D39

46.062

100

0.468
  cinA Streptococcus mitis NCTC 12261

45.823

100

0.466
  cinA Streptococcus mutans UA159

45.32

98.544

0.447
  cinA Streptococcus suis isolate S10

40.584

91.505

0.371