Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OK026_RS11245 Genome accession   NZ_CP109905
Coordinates   2474977..2476056 (+) Length   359 a.a.
NCBI ID   WP_114153678.1    Uniprot ID   -
Organism   Chromobacterium haemolyticum strain UGAL515B_03     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2469977..2481056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OK026_RS11220 (OK026_11235) rsmB 2470095..2471345 (-) 1251 WP_194427111.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  OK026_RS11225 (OK026_11240) htpX 2471442..2472299 (-) 858 WP_043635619.1 zinc metalloprotease HtpX -
  OK026_RS11230 (OK026_11245) fmt 2472334..2473254 (-) 921 WP_194427112.1 methionyl-tRNA formyltransferase -
  OK026_RS11235 (OK026_11250) def 2473292..2473795 (-) 504 WP_114153674.1 peptide deformylase -
  OK026_RS11240 (OK026_11255) - 2473946..2474980 (+) 1035 WP_114153676.1 LysM peptidoglycan-binding domain-containing protein -
  OK026_RS11245 (OK026_11260) dprA 2474977..2476056 (+) 1080 WP_114153678.1 DNA-processing protein DprA Machinery gene
  OK026_RS11250 (OK026_11265) - 2476091..2476549 (+) 459 WP_043635604.1 DUF494 family protein -
  OK026_RS11255 (OK026_11270) topA 2476814..2479114 (+) 2301 WP_043635602.1 type I DNA topoisomerase -
  OK026_RS11260 (OK026_11275) - 2479223..2479606 (-) 384 WP_114153680.1 DUF1622 domain-containing protein -
  OK026_RS11265 (OK026_11280) - 2479649..2480020 (-) 372 WP_043635597.1 diacylglycerol kinase -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 37732.12 Da        Isoelectric Point: 6.0429

>NTDB_id=750494 OK026_RS11245 WP_114153678.1 2474977..2476056(+) (dprA) [Chromobacterium haemolyticum strain UGAL515B_03]
MKTPPHDWLLLALTPGIGPAGFLRLIDAFGGADAALNANSRQTEPLIGKEAADALQRREAAASAEAALEWAQTPGCQLVS
LLDDDYPPQLAESNAPPPLLFARGRRELLAEPMLAIVGSRAATPQGKQNAESFSRDLAEHGYCIVSGLASGIDASAHHGA
LGQPSATVAVVGTGIDRVYPASNRQLAHRIAEEGLILSEFALGMGPLAAHFPRRNRIIAGLSRGCLVAEANTGSGSLITA
RLAMENNREVMAIPGSIHNPQSRGCHRLIKDGAKLVETVDDVLDEVGRLQRKRPRAKPAATVAESPLLEAMGFDPISMDA
LSTTLGLTVGELYAMLLELELAGLVASHPGGLFQRLTPG

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=750494 OK026_RS11245 WP_114153678.1 2474977..2476056(+) (dprA) [Chromobacterium haemolyticum strain UGAL515B_03]
ATGAAAACTCCGCCGCACGACTGGCTGCTGCTGGCGCTGACCCCCGGCATCGGCCCGGCCGGCTTTCTCCGGCTGATCGA
CGCCTTCGGCGGCGCGGACGCCGCCCTGAATGCGAATAGCCGCCAAACGGAGCCCTTGATCGGCAAAGAAGCGGCCGACG
CCCTGCAGCGCCGCGAGGCCGCCGCCTCCGCCGAAGCGGCGCTGGAGTGGGCGCAGACGCCGGGCTGCCAGTTGGTGTCG
CTGCTGGACGACGACTACCCGCCGCAACTGGCCGAATCCAACGCGCCGCCGCCGCTGCTGTTTGCCCGCGGGAGGCGCGA
ACTACTGGCCGAACCCATGCTCGCCATCGTGGGCAGCCGCGCCGCCACCCCGCAGGGCAAGCAGAACGCGGAGAGCTTCT
CCCGCGACTTGGCGGAACACGGCTATTGCATCGTCAGCGGCCTGGCCAGCGGCATCGACGCCTCGGCTCATCACGGCGCG
CTCGGGCAGCCGTCCGCCACGGTCGCCGTGGTCGGCACCGGCATAGACCGCGTCTATCCAGCCAGCAACCGCCAGTTGGC
GCACCGCATCGCCGAAGAAGGATTGATCCTGTCCGAGTTCGCGCTGGGCATGGGGCCGCTGGCCGCTCATTTTCCGCGCC
GAAACCGCATCATCGCCGGCCTCAGCCGCGGCTGCCTGGTGGCGGAGGCCAATACCGGATCCGGCTCGCTGATCACCGCG
CGGCTGGCGATGGAGAACAATCGAGAGGTGATGGCCATCCCCGGCTCCATCCACAACCCCCAGTCTCGCGGCTGTCACCG
GCTGATCAAGGACGGCGCCAAGCTGGTGGAAACCGTGGACGACGTGCTGGACGAAGTCGGCAGGCTGCAACGCAAACGCC
CCCGCGCCAAACCGGCGGCCACCGTCGCGGAATCGCCGCTGCTTGAAGCCATGGGATTTGACCCCATCAGTATGGATGCG
CTTTCGACCACGCTCGGGTTGACTGTGGGGGAGCTTTACGCGATGCTGCTCGAACTTGAGCTGGCCGGCCTGGTGGCCAG
CCATCCCGGCGGGCTTTTTCAGCGCCTGACCCCGGGCTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-277)

DprA winged helix domain (DprA_WH)

(292-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria meningitidis strain C311

48.579

100

0.524
  dprA Neisseria meningitidis MC58

48.579

100

0.524
  dprA Neisseria gonorrhoeae MS11

48.831

100

0.524
  dprA Neisseria gonorrhoeae strain FA1090

48.831

100

0.524
  dprA Vibrio campbellii strain DS40M4

39.837

100

0.409
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.106

99.721

0.39
  dprA Acinetobacter baylyi ADP1

37.912

100

0.384
  dprA Legionella pneumophila strain ERS1305867

47.586

80.78

0.384
  dprA Vibrio cholerae strain A1552

41.64

88.301

0.368
  dprA Glaesserella parasuis strain SC1401

42.258

86.351

0.365