Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   OHU65_RS20805 Genome accession   NZ_CP109859
Coordinates   3968334..3969575 (-) Length   413 a.a.
NCBI ID   WP_319641368.1    Uniprot ID   -
Organism   Priestia megaterium strain 207     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3963334..3974575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU65_RS20785 (OHU65_20785) spoVS 3963893..3964153 (-) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  OHU65_RS20790 (OHU65_20790) - 3964377..3965174 (-) 798 WP_028411380.1 TIGR00282 family metallophosphoesterase -
  OHU65_RS20795 (OHU65_20795) rny 3965256..3966815 (-) 1560 WP_013058803.1 ribonuclease Y -
  OHU65_RS20800 (OHU65_20800) recA 3967096..3968133 (-) 1038 WP_013058804.1 recombinase RecA Machinery gene
  OHU65_RS20805 (OHU65_20805) cinA 3968334..3969575 (-) 1242 WP_319641368.1 competence/damage-inducible protein A Machinery gene
  OHU65_RS20810 (OHU65_20810) pgsA 3969592..3970176 (-) 585 WP_013058806.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  OHU65_RS20815 (OHU65_20815) - 3970321..3971304 (-) 984 WP_264408514.1 helix-turn-helix domain-containing protein -
  OHU65_RS20820 (OHU65_20820) - 3971317..3972108 (-) 792 WP_013058808.1 DUF3388 domain-containing protein -
  OHU65_RS20825 (OHU65_20825) - 3972322..3972582 (-) 261 WP_013058809.1 DUF3243 domain-containing protein -
  OHU65_RS20830 (OHU65_20830) ymfI 3972648..3973373 (-) 726 WP_264408515.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44914.02 Da        Isoelectric Point: 4.9106

>NTDB_id=750275 OHU65_RS20805 WP_319641368.1 3968334..3969575(-) (cinA) [Priestia megaterium strain 207]
MMNAEIIGVGSELLLGQIANTNAQYLSKKLAELGINVYYHTVVGDNAQRLKEVIATAQTRAELIIFTGGLGPTKDDLTKE
TIASVLGVELTTNAEALESIEAYFKQSNRVMTPNNKKQAIVLEGSAVLPNDYGMAPGMGLTIEGKHYMLFPGPPKELYPM
YESYGQEFLAQKLELKESIESRVLRFFGIGESQLETEIEDLLDAQTNPTIAPLAGDGEVTLRLTAKHADTAEAQRMLDEV
EKTISERVGDYLYGYETTSLHNELVKELTAQGLTIASAESLTGGLFSERLTTVSGAGEAVKGSLVAYHYEIKQNILGVSE
HTLNQYGAVSEQCAAEMAQRIQQLCKTDIGIGFTGVAGPSKQEGHPVGTVYIGVAYKDQAPQVYSLQLSGSRQGIRSRTV
NYGCHYVLKMIKK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=750275 OHU65_RS20805 WP_319641368.1 3968334..3969575(-) (cinA) [Priestia megaterium strain 207]
ATGATGAACGCTGAAATTATTGGAGTCGGCTCTGAGCTGCTGCTTGGACAAATTGCCAATACAAACGCTCAGTATTTATC
GAAAAAATTAGCCGAACTTGGAATTAATGTTTACTATCATACGGTAGTAGGAGATAATGCACAGCGCTTAAAAGAAGTGA
TTGCTACAGCTCAAACGCGTGCAGAGTTAATTATTTTCACAGGCGGGCTTGGTCCTACAAAAGATGACTTAACAAAAGAA
ACAATTGCGAGTGTGCTAGGAGTAGAGCTGACAACAAATGCAGAAGCACTTGAAAGCATTGAAGCCTATTTCAAACAGTC
AAATCGTGTCATGACACCTAACAATAAAAAACAGGCAATTGTGCTAGAAGGTTCAGCAGTGCTCCCTAACGATTACGGAA
TGGCTCCAGGTATGGGGCTTACGATAGAGGGAAAACACTATATGCTATTTCCAGGGCCACCAAAAGAGCTTTATCCAATG
TATGAATCGTATGGTCAAGAATTTTTAGCTCAAAAGCTTGAATTAAAAGAAAGTATTGAATCACGCGTTCTTCGCTTTTT
CGGAATAGGAGAATCACAGCTTGAGACGGAAATTGAAGATTTGCTTGATGCGCAAACCAACCCGACGATTGCGCCGCTAG
CAGGAGATGGAGAAGTGACGCTTCGCTTAACTGCTAAGCACGCTGATACTGCTGAAGCACAGCGCATGTTAGACGAAGTG
GAAAAAACCATTTCAGAGCGCGTAGGCGATTATTTATATGGGTATGAAACAACTTCTTTACATAATGAATTGGTAAAAGA
ATTAACGGCACAAGGATTAACGATTGCTTCAGCCGAGAGTTTAACCGGCGGTTTATTCAGCGAACGTTTAACAACTGTTT
CAGGTGCTGGAGAAGCTGTAAAAGGCAGCCTGGTCGCCTATCATTATGAAATCAAGCAAAATATTCTCGGAGTGAGCGAA
CACACGCTGAATCAGTACGGAGCCGTTAGCGAGCAGTGCGCGGCTGAAATGGCTCAGCGTATTCAACAGTTATGTAAAAC
AGATATTGGCATCGGGTTTACAGGTGTAGCTGGACCCTCCAAACAAGAAGGACATCCTGTAGGAACAGTATATATAGGAG
TAGCCTATAAAGATCAAGCTCCTCAAGTTTACAGCCTGCAGCTATCTGGAAGCCGCCAGGGGATTCGTTCACGAACGGTT
AATTATGGCTGTCATTACGTATTAAAGATGATAAAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.268

99.274

0.588
  cinA Streptococcus mitis NCTC 12261

46.905

100

0.477
  cinA Streptococcus pneumoniae TIGR4

46.19

100

0.47
  cinA Streptococcus mitis SK321

46.19

100

0.47
  cinA Streptococcus pneumoniae Rx1

45.714

100

0.465
  cinA Streptococcus pneumoniae R6

45.714

100

0.465
  cinA Streptococcus pneumoniae D39

45.476

100

0.462
  cinA Streptococcus mutans UA159

45.122

99.274

0.448
  cinA Streptococcus suis isolate S10

39.683

91.525

0.363