Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   QBL21_RS23635 Genome accession   NZ_CP123230
Coordinates   5579167..5581302 (-) Length   711 a.a.
NCBI ID   WP_407564222.1    Uniprot ID   -
Organism   Streptomyces sp. 184     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5574167..5586302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBL21_RS23615 (QBL21_23605) - 5574723..5574845 (+) 123 Protein_4677 hypothetical protein -
  QBL21_RS23620 (QBL21_23610) - 5575010..5576026 (-) 1017 WP_407564219.1 TerC family protein -
  QBL21_RS23625 (QBL21_23615) - 5576246..5578309 (-) 2064 WP_407564220.1 TerD family protein -
  QBL21_RS23630 (QBL21_23620) - 5578392..5579003 (-) 612 WP_407564221.1 TerD family protein -
  QBL21_RS23635 (QBL21_23625) uvrB 5579167..5581302 (-) 2136 WP_407564222.1 excinuclease ABC subunit UvrB Machinery gene
  QBL21_RS23640 (QBL21_23630) - 5581602..5582522 (+) 921 WP_407564223.1 glycerophosphodiester phosphodiesterase -
  QBL21_RS23645 (QBL21_23635) - 5582574..5583413 (-) 840 WP_407566532.1 MHYT domain-containing protein -
  QBL21_RS23650 (QBL21_23640) - 5583653..5584210 (+) 558 WP_407564224.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  QBL21_RS23655 (QBL21_23645) - 5584271..5584813 (+) 543 WP_407564225.1 DUF1697 domain-containing protein -
  QBL21_RS23660 (QBL21_23650) - 5584887..5585465 (-) 579 WP_407564226.1 hypothetical protein -
  QBL21_RS23665 (QBL21_23655) - 5585577..5586059 (+) 483 WP_407564227.1 hypothetical protein -

Sequence

Protein


Download         Length: 711 a.a.        Molecular weight: 79703.27 Da        Isoelectric Point: 4.6685

>NTDB_id=749394 QBL21_RS23635 WP_407564222.1 5579167..5581302(-) (uvrB) [Streptomyces sp. 184]
MRPVTDIERTMAPFEVVSEYQPNGDQPAAIDELERRIRAGERDVVLLGATGTGKSATTAWMVERLQRPTLVLAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTP
QEYVDRMVPLKVGEEIDRDQLLRRFVDIQYTRNDQAFTRGTFRVRGDTVEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EVMSEDDGLYVFPASHYIAGPERMAKAVAGIETELGGQLGALEKQGKLLEAQRLRMRTTYDLEMLQQIGTCSGVENYSLH
MDGRETGSPPHTLLDYFPEDFLLVIDESHVTVPQVGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFLERIDQTVYL
SATPGPYELSRGDGVVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRTRAEKDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKITPGMAKAIDETNRRRAKQIAYNEEHGIDPQPLRKKINDIVAQIAREEIDTEALLGSGYRATKPDSPAKAPVPELRQ
KTKPAGRGGRAEAPAAPTETPAADLAVQIEDMTTRMRSAAAELQFEVAARLRDEVAEMKKELRQMKEAGLS

Nucleotide


Download         Length: 2136 bp        

>NTDB_id=749394 QBL21_RS23635 WP_407564222.1 5579167..5581302(-) (uvrB) [Streptomyces sp. 184]
ATGCGGCCCGTCACAGACATCGAACGCACCATGGCGCCCTTCGAGGTAGTCAGCGAATACCAGCCGAACGGCGACCAGCC
CGCCGCCATCGACGAGCTCGAACGGCGGATCAGGGCCGGCGAGCGGGACGTCGTGCTGCTCGGCGCGACCGGCACGGGCA
AGTCGGCGACGACGGCCTGGATGGTCGAGCGCCTCCAGCGGCCCACGCTGGTCCTCGCGCCCAACAAGACGCTGGCCGCG
CAACTGGCGAACGAGTTCCGCGAGCTGCTGCCGAACAACGCGGTGGAGTATTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTACGTCCCCCAGACGGACACGTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTGGAGCGCCTGCGCCACT
CCGCGACGAACTCGCTGCTCACCCGGCGCGACGTCATCGTGGTCGCCTCCGTCTCCTGCATCTACGGCCTGGGCACGCCG
CAGGAGTACGTCGACCGCATGGTGCCGCTGAAGGTCGGCGAGGAGATCGACCGGGACCAGTTGCTGCGCCGCTTCGTCGA
CATCCAGTACACCCGTAACGACCAGGCGTTCACGCGCGGCACGTTCCGGGTCCGCGGCGACACCGTCGAGATCTTCCCGG
TGTACGAGGAGCTGGCCGTCCGCATCGAGATGTTCGGGGACGAGATCGAGGCCCTCTCCACGCTCCACCCGCTGACCGGC
GAGGTGATGAGCGAGGACGACGGGCTGTACGTCTTCCCCGCCTCGCACTACATCGCCGGCCCCGAGCGCATGGCCAAGGC
CGTCGCCGGCATCGAGACCGAGCTGGGCGGGCAGCTCGGCGCGCTGGAGAAGCAGGGCAAGCTGCTGGAGGCGCAGCGGC
TGCGCATGCGCACGACGTACGACCTGGAGATGCTCCAGCAGATCGGCACCTGCTCCGGCGTGGAGAACTACTCGCTGCAC
ATGGACGGCCGCGAGACCGGCTCCCCGCCGCACACCCTGCTCGACTACTTCCCGGAGGACTTCCTCCTCGTCATCGACGA
GTCGCACGTCACCGTCCCGCAGGTCGGCGCGATGTACGAGGGCGACGCCTCCCGCAAGCGCACCCTGGTCGACCACGGCT
TCCGGCTGCCGTCCGCGCTGGACAACCGCCCGCTGAAGTGGGAGGAGTTCCTGGAGCGCATCGACCAGACGGTCTACCTC
TCCGCCACCCCCGGGCCGTACGAGCTGTCCCGCGGCGACGGCGTCGTGGAGCAGATCATCCGCCCCACCGGGCTCGTCGA
CCCCGAGGTCGTCGTCAAGCCGACCGAGGGCCAGATCGACGACCTGGTGCACGAGATCCGCACGCGCGCGGAGAAGGACG
AGCGCGTCCTCGTCACCACGCTGACGAAGAAGATGGCCGAAGACCTCACGGACTACTTCCTGGAGCTGGGCATCCAGGTG
CGCTACCTGCACAGCGACGTCGACACGCTGCGCCGCGTCGAGCTGCTGCGCGAACTGCGCGCCGGGGAGTACGACGTGCT
GGTGGGCATCAACCTGCTGCGGGAGGGCCTGGACCTGCCCGAGGTCTCCCTCGTCGCCATCCTCGACGCCGACAAGGAGG
GCTTCCTCCGGTCGGGCACGTCGCTCATCCAGACCATCGGCCGCGCCGCGCGCAACGTCTCCGGCCAGGTGCACATGTAC
GCGGACAAGATCACGCCGGGCATGGCGAAGGCGATCGACGAGACGAACCGGCGCCGCGCCAAGCAGATCGCGTACAACGA
GGAACACGGCATCGACCCGCAGCCGCTGCGCAAGAAGATCAACGACATCGTCGCGCAGATCGCGCGCGAGGAGATCGACA
CCGAGGCGCTGCTCGGCTCGGGCTACCGGGCCACGAAGCCCGACTCCCCGGCGAAGGCGCCGGTGCCGGAGCTGCGGCAG
AAGACGAAGCCCGCCGGCCGCGGCGGCCGGGCCGAGGCGCCGGCCGCGCCCACCGAGACGCCGGCTGCCGATCTCGCCGT
GCAGATCGAGGACATGACCACCCGGATGCGGTCCGCCGCCGCGGAGCTCCAGTTCGAGGTGGCGGCCCGGCTGCGGGACG
AGGTGGCGGAGATGAAGAAGGAGCTGCGGCAGATGAAGGAGGCAGGGCTGTCGTAG

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(20-142)

Ultra-violet resistance protein B (UvrB)

(559-600)

UvrB/uvrC motif (UVR)

(668-700)

Helicase conserved C-terminal domain (Helicase_C)

(442-551)

UvrB interaction domain (UvrB_inter)

(169-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

58.744

94.093

0.553
  uvrB Streptococcus pneumoniae R6

58.744

94.093

0.553
  uvrB Streptococcus pneumoniae D39

58.744

94.093

0.553