Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   L0P93_RS09630 Genome accession   NZ_CP109795
Coordinates   1848142..1849392 (+) Length   416 a.a.
NCBI ID   WP_277161334.1    Uniprot ID   -
Organism   Bacillus velezensis strain B19     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1843142..1854392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0P93_RS09600 (L0P93_09615) - 1843225..1844511 (+) 1287 WP_029973455.1 pitrilysin family protein -
  L0P93_RS09605 (L0P93_09620) - 1844571..1845299 (+) 729 WP_029973454.1 SDR family oxidoreductase -
  L0P93_RS09610 (L0P93_09625) - 1845375..1845632 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  L0P93_RS09615 (L0P93_09630) - 1845760..1846551 (+) 792 WP_003154149.1 YmfK family protein -
  L0P93_RS09620 (L0P93_09635) - 1846570..1847469 (+) 900 WP_014417801.1 RodZ domain-containing protein -
  L0P93_RS09625 (L0P93_09640) pgsA 1847543..1848124 (+) 582 WP_007409821.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  L0P93_RS09630 (L0P93_09645) cinA 1848142..1849392 (+) 1251 WP_277161334.1 competence/damage-inducible protein A Machinery gene
  L0P93_RS09635 (L0P93_09650) recA 1849563..1850606 (+) 1044 WP_003154145.1 recombinase RecA Machinery gene
  L0P93_RS09640 (L0P93_09655) - 1850773..1851954 (+) 1182 WP_017417799.1 serine hydrolase domain-containing protein -
  L0P93_RS09645 (L0P93_09660) rny 1852247..1853803 (+) 1557 WP_277161335.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45051.30 Da        Isoelectric Point: 5.2580

>NTDB_id=749239 L0P93_RS09630 WP_277161334.1 1848142..1849392(+) (cinA) [Bacillus velezensis strain B19]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDLIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFRSIEEYFVKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYILLPGPPSES
RPMFENEAKPPLLKKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERVGEFFYGYDDTSLVKELSKACRQNKITISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQHVLG
VKAETLAESGAVSKECAKELAAGVRKLTGSDIGISFTGVAGPDPQEGHAPGRVFIGISAEGKEEVHEFNFAGSRTGIRKR
AAKYGCHLILKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=749239 L0P93_RS09630 WP_277161334.1 1848142..1849392(+) (cinA) [Bacillus velezensis strain B19]
ATGGAAATAGCAAAAAAAGCAGAGATCATTGCAGTCGGCTCGGAGCTTCTGCTCGGCCAGATCGCCAATACGAACGCGCA
GTTTATCAGTAAAGAGCTGGCGGAAATCGGTGTAAACGTGTTTTATCATACCGCTGTCGGTGACAATCCGGAGCGGCTTA
AGCAAGTCATCCGCATTGCCGAAGAGCGCTCAGATCTGATTATTTTTTCAGGCGGCCTCGGGCCGACCAAGGACGATTTA
ACGAAAGAAACCATTGCAAACACACTGGGGCGCCCGCTCGTTCTGAATGACGAAGCATTCCGGTCGATCGAAGAATATTT
CGTGAAAACAAAACGGACCATGTCGCCGAATAACCGCAAACAGGCGCTCGTCATTGAGGGCTCAGACGTTTTGGCGAATC
ATTTCGGCATGGCGCCGGGAATGCTTGCAGAGCACGGCTCAAGGCTTTATATCTTGCTTCCCGGGCCGCCGAGCGAGTCG
CGTCCGATGTTTGAAAATGAAGCGAAGCCGCCGCTTCTTAAAAAGCTCGGTTCTAATGAGAAAATCGTTTCAACCGTGCT
GCGGTTTTTCGGAATCGGTGAATCCCAGCTTGAAGCTGATTTAGAAGATATCATTGATGCGCAGACGAACCCGACGATTG
CGCCGCTTGCTGCTGACGGCGAGGTCACGTTGCGTTTAACGGCGAAACATGCTGACGAAAAAGAAACAGAACGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTAGAACGTGTCGGTGAATTTTTCTACGGATATGATGATACGTCTCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAAAACAAAATCACGATTTCTTCTGCCGAAAGCTTTACAGGCGGCCTGTTTTCAGAGTGGGTGA
CTGATTTAAGCGGTGCGTCTCAACTATTTGCAGGGGGCGTTGTCTGTTATTCCGACAGCGTGAAACAGCATGTGCTCGGC
GTGAAAGCTGAGACGCTCGCAGAAAGCGGAGCGGTCAGCAAAGAGTGTGCGAAAGAGCTTGCAGCCGGTGTGAGAAAGCT
GACCGGAAGCGATATCGGCATCAGCTTTACCGGGGTTGCGGGTCCCGACCCGCAGGAAGGGCATGCTCCGGGCCGCGTCT
TTATCGGCATTTCGGCGGAAGGAAAAGAAGAGGTGCACGAATTTAACTTTGCCGGCTCAAGAACCGGAATCAGAAAGCGC
GCCGCTAAATACGGCTGCCATCTCATTTTGAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Competence-damaged protein (CinA)

(261-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

89.423

100

0.894
  cinA Streptococcus mitis NCTC 12261

47.129

100

0.474
  cinA Streptococcus mitis SK321

46.651

100

0.469
  cinA Streptococcus pneumoniae TIGR4

46.411

100

0.466
  cinA Streptococcus pneumoniae Rx1

46.172

100

0.464
  cinA Streptococcus pneumoniae R6

46.172

100

0.464
  cinA Streptococcus pneumoniae D39

45.933

100

0.462
  cinA Streptococcus mutans UA159

45.763

99.279

0.454
  cinA Streptococcus suis isolate S10

40.921

93.99

0.385