Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OF800_RS09520 Genome accession   NZ_CP109636
Coordinates   1903505..1903999 (-) Length   164 a.a.
NCBI ID   WP_264308087.1    Uniprot ID   A0AA46TW58
Organism   Lactococcus garvieae strain Alexii-6_2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1898505..1908999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OF800_RS09490 (OF800_09490) recX 1898835..1899668 (+) 834 WP_264308084.1 recombination regulator RecX -
  OF800_RS09495 (OF800_09495) - 1899751..1900599 (+) 849 WP_042218979.1 MurR/RpiR family transcriptional regulator -
  OF800_RS09500 (OF800_09500) - 1900631..1900939 (+) 309 WP_014025499.1 DUF960 domain-containing protein -
  OF800_RS09505 (OF800_09505) - 1900973..1901740 (-) 768 WP_264308085.1 metallophosphoesterase -
  OF800_RS09510 (OF800_09510) - 1901825..1903033 (-) 1209 WP_264314029.1 hypothetical protein -
  OF800_RS09515 (OF800_09515) rpsR 1903146..1903391 (-) 246 WP_003133134.1 30S ribosomal protein S18 -
  OF800_RS09520 (OF800_09520) ssb 1903505..1903999 (-) 495 WP_264308087.1 single-stranded DNA-binding protein Machinery gene
  OF800_RS09525 (OF800_09525) rpsF 1904037..1904330 (-) 294 WP_264308088.1 30S ribosomal protein S6 -
  OF800_RS09530 (OF800_09530) - 1904517..1904729 (-) 213 WP_016171080.1 hypothetical protein -
  OF800_RS09535 (OF800_09535) - 1905200..1906663 (+) 1464 WP_003133128.1 amino acid permease -
  OF800_RS09540 (OF800_09540) dnaX 1906705..1908363 (-) 1659 WP_264308089.1 DNA polymerase III subunit gamma/tau -
  OF800_RS09545 (OF800_09545) - 1908376..1908996 (-) 621 WP_264308090.1 phosphotransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18004.87 Da        Isoelectric Point: 4.7719

>NTDB_id=748709 OF800_RS09520 WP_264308087.1 1903505..1903999(-) (ssb) [Lactococcus garvieae strain Alexii-6_2]
MINNVVLVGRVVRDPELRYTPQNTAVATFTIAVNRRFKNAQGEREADFINCVIWRQSAENLANWAKKGALIGVTGSIQVR
NYENKEGQRVYVTEVLADNFQMLESRAAREGGSGSYSAPQQQQSQNRPFAGSDSSAGNATPDFGRDADPFGGSPMEISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=748709 OF800_RS09520 WP_264308087.1 1903505..1903999(-) (ssb) [Lactococcus garvieae strain Alexii-6_2]
ATGATTAATAATGTTGTTTTGGTCGGACGCGTTGTGCGTGACCCTGAACTGCGATATACACCGCAAAATACTGCGGTTGC
TACATTTACGATTGCTGTTAACCGTCGTTTTAAAAACGCGCAAGGCGAACGTGAAGCTGATTTCATTAACTGTGTCATCT
GGCGTCAATCTGCTGAAAACTTGGCAAATTGGGCTAAAAAAGGTGCCTTGATTGGTGTAACAGGTAGCATTCAAGTGCGA
AATTATGAGAACAAAGAAGGTCAACGTGTTTACGTGACTGAAGTATTGGCTGATAACTTCCAAATGCTTGAGAGTCGTGC
CGCACGTGAAGGTGGCTCTGGTTCATATTCTGCACCACAGCAACAACAATCACAAAATCGTCCTTTTGCTGGCTCTGACA
GCTCAGCAGGAAATGCAACACCCGATTTTGGTCGTGATGCAGATCCATTTGGTGGCTCACCAATGGAAATCTCAGATGAT
GATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.31

100

0.598
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.933

100

0.585
  ssbB/cilA Streptococcus pneumoniae TIGR4

49.242

80.488

0.396
  ssbB/cilA Streptococcus pneumoniae D39

48.485

80.488

0.39
  ssbB/cilA Streptococcus pneumoniae R6

48.485

80.488

0.39
  ssbB/cilA Streptococcus mitis SK321

48.485

80.488

0.39
  ssbB/cilA Streptococcus mitis NCTC 12261

48.485

80.488

0.39
  ssbB/cilA Streptococcus pneumoniae Rx1

48.485

80.488

0.39
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

64.634

0.372