Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   OEG79_RS12650 Genome accession   NZ_CP107549
Coordinates   2658222..2658545 (-) Length   107 a.a.
NCBI ID   WP_264145358.1    Uniprot ID   -
Organism   Pseudomonas sp. Z8(2022)     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2653222..2663545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OEG79_RS12635 (OEG79_12635) uvrB 2654046..2656061 (-) 2016 WP_264145356.1 excinuclease ABC subunit UvrB -
  OEG79_RS12640 (OEG79_12640) - 2656307..2657503 (+) 1197 WP_264145357.1 amino acid aminotransferase -
  OEG79_RS12650 (OEG79_12650) comEA/comE1 2658222..2658545 (-) 324 WP_264145358.1 ComEA family DNA-binding protein Machinery gene
  OEG79_RS12655 (OEG79_12655) - 2658634..2660610 (-) 1977 WP_413247507.1 polysaccharide biosynthesis protein -
  OEG79_RS12660 (OEG79_12660) - 2660707..2661258 (-) 552 WP_072424718.1 sugar transferase -
  OEG79_RS12665 (OEG79_12665) - 2661242..2662192 (-) 951 WP_264145360.1 UDP-glucose 4-epimerase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 11252.83 Da        Isoelectric Point: 5.1316

>NTDB_id=740581 OEG79_RS12650 WP_264145358.1 2658222..2658545(-) (comEA/comE1) [Pseudomonas sp. Z8(2022)]
MLKIRLSSILFAVLASFSLAAAAAENPKTESTKAAAVQVAQVAAVNLNTADAETLQRELVGIGATKAQAIVAYREEHGNF
ASVDELLEVKGIGEATLEKNRDKLSVN

Nucleotide


Download         Length: 324 bp        

>NTDB_id=740581 OEG79_RS12650 WP_264145358.1 2658222..2658545(-) (comEA/comE1) [Pseudomonas sp. Z8(2022)]
ATGCTGAAAATCCGTCTGTCTTCCATTCTGTTTGCTGTTCTTGCTTCCTTCTCTCTGGCTGCTGCTGCAGCTGAAAACCC
AAAAACCGAAAGTACCAAAGCGGCTGCAGTGCAGGTCGCGCAGGTTGCCGCGGTCAATCTGAATACTGCCGATGCTGAAA
CGCTACAGCGTGAGCTGGTGGGGATTGGTGCGACCAAGGCGCAGGCGATTGTGGCTTACCGTGAGGAGCACGGTAATTTC
GCCTCGGTGGACGAGTTGTTGGAAGTTAAGGGTATTGGCGAGGCGACGCTGGAGAAGAATCGCGACAAGTTGAGTGTGAA
CTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(44-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

50.943

99.065

0.505
  comE1/comEA Haemophilus influenzae Rd KW20

44.545

100

0.458
  comEA Legionella pneumophila str. Paris

46.154

97.196

0.449
  comEA Legionella pneumophila strain ERS1305867

46.154

97.196

0.449
  comEA Vibrio parahaemolyticus RIMD 2210633

43.299

90.654

0.393
  comEA Vibrio cholerae C6706

54.93

66.355

0.364
  comEA Vibrio cholerae strain A1552

54.93

66.355

0.364
  comEA Acinetobacter baylyi ADP1

44.318

82.243

0.364
  comEA Vibrio campbellii strain DS40M4

40.206

90.654

0.364