Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   K5607_RS15335 Genome accession   NZ_AP019782
Coordinates   3470580..3471596 (+) Length   338 a.a.
NCBI ID   WP_343222927.1    Uniprot ID   A0A8D5ALR1
Organism   Methylogaea oryzae strain E10     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3465580..3476596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5607_RS15310 (MoryE10_29920) - 3465916..3466467 (-) 552 WP_221047526.1 DUF4390 domain-containing protein -
  K5607_RS15315 (MoryE10_29930) rsmB 3466460..3467764 (-) 1305 WP_221047527.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  K5607_RS15320 (MoryE10_29940) fmt 3467757..3468680 (-) 924 WP_221047528.1 methionyl-tRNA formyltransferase -
  K5607_RS15325 (MoryE10_29950) def 3468712..3469251 (-) 540 WP_221047529.1 peptide deformylase -
  K5607_RS15330 (MoryE10_29960) - 3469398..3470492 (+) 1095 WP_221047530.1 LysM peptidoglycan-binding domain-containing protein -
  K5607_RS15335 (MoryE10_29970) dprA 3470580..3471596 (+) 1017 WP_343222927.1 DNA-processing protein DprA Machinery gene
  K5607_RS15340 (MoryE10_29980) - 3471651..3472115 (+) 465 WP_054773444.1 DUF494 domain-containing protein -
  K5607_RS15345 (MoryE10_29990) topA 3472285..3474591 (+) 2307 WP_221047531.1 type I DNA topoisomerase -
  K5607_RS15350 (MoryE10_30000) dusB 3474729..3475691 (+) 963 WP_221047532.1 tRNA dihydrouridine synthase DusB -
  K5607_RS15355 - 3476183..3476374 (-) 192 WP_156302402.1 hypothetical protein -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 35112.98 Da        Isoelectric Point: 4.9873

>NTDB_id=73990 K5607_RS15335 WP_343222927.1 3470580..3471596(+) (dprA) [Methylogaea oryzae strain E10]
MLERLGSPDAAFGQSTAGLRGLGLADAAIAALQQPDWTQVDADLDWLANNDCRVLTLHDDLYPALLKQIHDPPPLLYVRG
DPALLSLPQLAVVGSRNPSPPGERTAADFAAALSRTGLGITSGMALGIDAASHRGALSCGGVTIAVVGTGLDRVYPARHR
QLAHDIARQGALVSELPPGTPVLPSHFPRRNRIISGLSLGVLVVEAAAQSGSLITARQALEQGREVYAIPGSIHNPLAKG
CNALIRQGAKLVETVADILEELGGFVAPDLAAPAQDGETLQPAEDHLGLLKFVAYEPTSVDTLVALSGETPEAVASTLLM
LELSGHIASAAGGSYYRL

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=73990 K5607_RS15335 WP_343222927.1 3470580..3471596(+) (dprA) [Methylogaea oryzae strain E10]
TTGCTGGAAAGGCTGGGGTCGCCCGACGCGGCGTTCGGCCAGTCGACCGCCGGCTTGCGCGGCCTGGGCCTGGCCGACGC
CGCCATCGCCGCCTTGCAGCAGCCCGACTGGACCCAGGTGGACGCCGACCTGGATTGGCTGGCGAACAACGACTGTCGCG
TGCTGACCCTGCACGACGACCTTTACCCTGCCCTGCTCAAACAAATCCACGACCCGCCGCCGCTGCTCTACGTGCGGGGC
GATCCGGCCCTGCTGTCCTTACCGCAGTTGGCCGTGGTGGGCAGCCGCAACCCCTCGCCGCCCGGGGAGCGCACCGCCGC
GGATTTCGCCGCCGCCCTGAGCCGGACCGGCTTGGGCATCACCAGCGGCATGGCCTTGGGAATCGACGCCGCCAGCCATC
GCGGCGCGCTGTCCTGCGGCGGCGTCACCATCGCCGTGGTCGGCACCGGCCTGGATCGGGTATACCCCGCCCGCCATCGG
CAACTGGCCCACGACATCGCCCGACAGGGTGCGCTGGTGTCGGAATTGCCGCCCGGAACGCCGGTGCTGCCCAGCCATTT
CCCACGCCGCAACCGCATCATCAGCGGACTGAGCCTGGGCGTGCTGGTGGTGGAAGCGGCGGCCCAGAGCGGCTCGCTGA
TCACCGCCCGGCAAGCGCTGGAGCAAGGGCGCGAGGTCTACGCCATCCCCGGCTCCATTCATAACCCCCTGGCCAAGGGC
TGCAATGCCCTGATCCGCCAGGGAGCGAAGCTGGTGGAAACCGTGGCGGACATACTGGAGGAACTGGGCGGCTTCGTCGC
GCCGGACTTAGCCGCCCCGGCGCAGGACGGGGAAACGCTCCAGCCGGCCGAAGATCACCTGGGCCTGCTCAAATTTGTTG
CCTATGAACCCACCTCGGTGGATACTTTAGTCGCGCTTAGCGGCGAAACGCCCGAAGCCGTGGCTTCCACGCTATTAATG
TTGGAGCTGTCTGGCCACATCGCTTCCGCTGCCGGCGGGAGTTACTACCGCTTGTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(47-253)

DprA winged helix domain (DprA_WH)

(280-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

49.112

100

0.491
  dprA Legionella pneumophila strain ERS1305867

46.97

97.633

0.459
  dprA Glaesserella parasuis strain SC1401

45.619

97.929

0.447
  dprA Vibrio cholerae strain A1552

48.039

90.533

0.435
  dprA Acinetobacter baumannii D1279779

40.698

100

0.414
  dprA Acinetobacter baumannii strain A118

40.762

100

0.411
  dprA Haemophilus influenzae Rd KW20

42.857

93.195

0.399
  dprA Neisseria meningitidis strain C311

48.413

74.556

0.361
  dprA Neisseria meningitidis MC58

48.413

74.556

0.361

Multiple sequence alignment