Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OFO16_RS12235 Genome accession   NZ_CP107282
Coordinates   2680067..2681290 (+) Length   407 a.a.
NCBI ID   WP_263837434.1    Uniprot ID   -
Organism   Vibrio natriegens strain PWH3a     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2675067..2686290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFO16_RS12215 (OFO16_12215) ampD 2676076..2676621 (-) 546 WP_263837430.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  OFO16_RS12220 (OFO16_12220) nadC 2676714..2677601 (+) 888 WP_263837431.1 carboxylating nicotinate-nucleotide diphosphorylase -
  OFO16_RS12225 (OFO16_12225) - 2677860..2678348 (+) 489 WP_263837432.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  OFO16_RS12230 (OFO16_12230) pilB 2678351..2680036 (+) 1686 WP_263837433.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OFO16_RS12235 (OFO16_12235) pilC 2680067..2681290 (+) 1224 WP_263837434.1 type II secretion system F family protein Machinery gene
  OFO16_RS12240 (OFO16_12240) pilD 2681358..2682227 (+) 870 WP_263837435.1 A24 family peptidase Machinery gene
  OFO16_RS12245 (OFO16_12245) coaE 2682228..2682842 (+) 615 WP_014232954.1 dephospho-CoA kinase -
  OFO16_RS12250 (OFO16_12250) zapD 2682869..2683609 (+) 741 WP_020333952.1 cell division protein ZapD -
  OFO16_RS12255 (OFO16_12255) yacG 2683683..2683877 (+) 195 WP_263837436.1 DNA gyrase inhibitor YacG -
  OFO16_RS12260 (OFO16_12260) rplS 2684385..2684738 (-) 354 WP_005379971.1 50S ribosomal protein L19 -
  OFO16_RS12265 (OFO16_12265) trmD 2684779..2685540 (-) 762 WP_263837437.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  OFO16_RS12270 (OFO16_12270) rimM 2685568..2686116 (-) 549 WP_014232958.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45140.41 Da        Isoelectric Point: 10.3501

>NTDB_id=739271 OFO16_RS12235 WP_263837434.1 2680067..2681290(+) (pilC) [Vibrio natriegens strain PWH3a]
MKTTTPQLKNFRWKGINSSGKKTSGKTLAMSEVEVRERLNAQHIKIKKLKKSSISFLTKLSHRVKGKDITVFTRQISTML
ITGVPLVQALKLVSNNHKKAEMKSILMSITRAVEAGTPMSKAMRTASSHFDSLYTDLIATGELSGNLAEVFERLATYREK
SEELRAKVIKALIYPAMVMLVALGVSYLMLTQVIPEFEKMFSGFGADLPWFTRQVLDLSAWMQNWSSFIALGTLSLVISA
RILVKRSDSFRLMMDRAILKIPVLGAVLSKAAIAKFSRTLATSFSAGIPILTSLKTTSKTSGNLHYQLAVEEVYRDTAAG
MPMYVAMRNCDVFPELVLQMVMIGEESGRIDEMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGVVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=739271 OFO16_RS12235 WP_263837434.1 2680067..2681290(+) (pilC) [Vibrio natriegens strain PWH3a]
ATGAAAACGACGACCCCACAACTCAAGAACTTCCGCTGGAAAGGCATTAATAGCTCAGGAAAAAAGACCTCTGGGAAAAC
GCTGGCAATGAGCGAAGTGGAAGTGCGCGAACGACTCAACGCCCAGCACATAAAAATCAAAAAACTGAAAAAAAGCAGTA
TTTCCTTTTTAACCAAACTCAGCCATCGCGTAAAAGGCAAAGACATCACCGTTTTCACTCGCCAAATTTCTACCATGCTT
ATTACAGGAGTCCCACTCGTTCAGGCTTTGAAACTGGTCTCCAATAACCATAAAAAAGCCGAGATGAAGTCTATTTTAAT
GAGCATAACTAGGGCAGTTGAAGCGGGCACGCCGATGTCTAAAGCGATGCGCACCGCCAGCTCACACTTTGACTCGCTAT
ATACTGACCTCATCGCAACCGGAGAACTCTCTGGCAATCTGGCAGAAGTCTTTGAACGACTGGCCACTTATCGTGAGAAA
AGCGAGGAACTCAGAGCCAAAGTCATAAAAGCCCTGATCTACCCAGCCATGGTTATGTTGGTTGCGCTCGGCGTGTCCTA
TCTCATGCTCACTCAAGTTATCCCCGAGTTTGAAAAAATGTTTTCTGGGTTTGGTGCAGATTTACCTTGGTTCACCAGAC
AAGTACTAGACTTGTCTGCGTGGATGCAAAATTGGAGTTCATTTATCGCTCTTGGGACACTTAGCCTAGTTATATCAGCA
AGAATACTGGTAAAACGTTCTGATTCCTTTCGCTTGATGATGGATCGAGCCATATTGAAAATTCCCGTTCTTGGCGCAGT
GTTGTCCAAGGCTGCGATTGCTAAATTTAGCCGAACCCTGGCCACCAGCTTTAGTGCTGGTATCCCAATCCTGACCAGTT
TAAAAACCACCTCAAAAACATCAGGAAACCTGCACTATCAGCTAGCAGTAGAAGAGGTCTATCGTGATACAGCAGCTGGT
ATGCCAATGTATGTCGCGATGCGTAACTGCGATGTTTTCCCTGAATTAGTGCTACAAATGGTGATGATTGGAGAAGAATC
AGGCAGGATCGATGAGATGCTCAATAAAGTCGCCACTATTTACGAATTTGAAGTCGATAATACCGTCGATAACTTGAGTA
AGATTCTCGAACCGCTGATTATCGTTTTTCTTGGTGTGGTTGTTGGTGGATTAGTGACAGCAATGTACCTGCCAATCTTT
AACTTAATGAGTGTATTAGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

84.767

100

0.848
  pilC Vibrio cholerae strain A1552

73.333

99.509

0.73
  pilC Acinetobacter baylyi ADP1

42.289

98.771

0.418
  pilC Legionella pneumophila strain ERS1305867

41.278

100

0.413
  pilC Acinetobacter baumannii D1279779

40.842

99.263

0.405
  pilG Neisseria gonorrhoeae MS11

40

99.509

0.398
  pilG Neisseria meningitidis 44/76-A

39.753

99.509

0.396
  pilC Pseudomonas stutzeri DSM 10701

40.404

97.297

0.393