Detailed information NTG0739272

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OFO16_RS12240
• Genome accession: NZ_CP107282
• Coordinates: 2681358..2682227 (+)
• Length: 289 a.a.
• NCBI ID: WP_263837435.1
• Uniprot ID: -
• Organism: Vibrio natriegens strain PWH3a
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2676358..2687227

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OFO16_RS12220 (OFO16_12220)	nadC	2676714..2677601 (+)	888	WP_263837431.1	carboxylating nicotinate-nucleotide diphosphorylase	-
OFO16_RS12225 (OFO16_12225)	-	2677860..2678348 (+)	489	WP_263837432.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
OFO16_RS12230 (OFO16_12230)	pilB	2678351..2680036 (+)	1686	WP_263837433.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OFO16_RS12235 (OFO16_12235)	pilC	2680067..2681290 (+)	1224	WP_263837434.1	type II secretion system F family protein	Machinery gene
OFO16_RS12240 (OFO16_12240)	pilD	2681358..2682227 (+)	870	WP_263837435.1	A24 family peptidase	Machinery gene
OFO16_RS12245 (OFO16_12245)	coaE	2682228..2682842 (+)	615	WP_014232954.1	dephospho-CoA kinase	-
OFO16_RS12250 (OFO16_12250)	zapD	2682869..2683609 (+)	741	WP_020333952.1	cell division protein ZapD	-
OFO16_RS12255 (OFO16_12255)	yacG	2683683..2683877 (+)	195	WP_263837436.1	DNA gyrase inhibitor YacG	-
OFO16_RS12260 (OFO16_12260)	rplS	2684385..2684738 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
OFO16_RS12265 (OFO16_12265)	trmD	2684779..2685540 (-)	762	WP_263837437.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
OFO16_RS12270 (OFO16_12270)	rimM	2685568..2686116 (-)	549	WP_014232958.1	ribosome maturation factor RimM	-
OFO16_RS12275 (OFO16_12275)	rpsP	2686147..2686395 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32382.44 Da
• Isoelectric Point: 6.4408

>NTDB_id=739272 OFO16_RS12240 WP_263837435.1 2681358..2682227(+) (pilD) [Vibrio natriegens strain PWH3a]
MEVFQYYPWLFVIFAVVFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYNIESPKEVLTLSVPRSSCQQCGTPIRIR
DNIPVISWLLLKGKCHNCSSPISARYPLVEILTAACSGYVAFHFGFSYFTIALIFFTFILITATFIDLDTMLLPDQLTLP
LTWAGIAIALFEVSPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQALPMIILLSSIVGV
IFGIIQLRLQKKGIEKAFPFGPYLAIAGWVSLLWGDQILNWYFTSILGA

Nucleotide

• Length: 870 bp

>NTDB_id=739272 OFO16_RS12240 WP_263837435.1 2681358..2682227(+) (pilD) [Vibrio natriegens strain PWH3a]
ATGGAAGTATTTCAGTACTACCCATGGTTATTCGTTATATTCGCCGTGGTTTTTGGTTTGATCGTGGGAAGTTTTCTCAA
TGTCGTTATCTATCGACTTCCCAAAATCATGGAGCTGGAATGGCGCCGTGAATGTGCTGAGTCTTTTCCTGAATACAATA
TTGAATCACCTAAAGAAGTACTCACATTAAGCGTACCTCGCTCCTCTTGCCAACAGTGCGGTACTCCGATTCGCATTCGC
GATAACATCCCAGTGATCAGTTGGCTACTTCTAAAAGGTAAATGCCACAACTGTAGCTCACCGATTAGCGCCAGATACCC
ACTTGTAGAAATACTTACCGCAGCCTGCTCCGGCTACGTTGCGTTTCATTTTGGATTCAGCTATTTCACTATTGCGCTAA
TATTCTTTACTTTCATTCTGATCACAGCGACATTTATCGATCTCGACACCATGCTGCTGCCCGATCAATTAACATTGCCA
TTAACTTGGGCTGGCATTGCTATAGCATTGTTCGAAGTCAGTCCTGTTAGTCTGCAAGATGCCGTGATCGGTGCAATCGC
TGGCTATTTATGTCTCTGGTCTGTTTATTGGGGCTTTAAGTTGCTCACTGGCAAGGAAGGCATGGGCTATGGCGACTTTA
AGCTACTCGCGGCGCTTGGCGCATGGCTGGGTTGGCAAGCTTTGCCAATGATCATTTTGCTTTCTTCCATCGTAGGCGTC
ATATTTGGAATAATTCAGCTACGATTGCAGAAGAAAGGGATCGAAAAGGCCTTCCCTTTCGGTCCTTACTTAGCGATTGC
CGGATGGGTAAGCTTACTCTGGGGTGATCAAATTCTAAATTGGTATTTCACATCAATTCTAGGAGCGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	87.5	99.654	0.872
pilD	Vibrio cholerae strain A1552	71.875	99.654	0.716
pilD	Acinetobacter baumannii D1279779	53.43	95.848	0.512
pilD	Acinetobacter nosocomialis M2	53.069	95.848	0.509
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446