Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   OD347_RS09135 Genome accession   NZ_CP107079
Coordinates   1785898..1787148 (+) Length   416 a.a.
NCBI ID   WP_088612824.1    Uniprot ID   -
Organism   Bacillus velezensis strain LT-2     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1780898..1792148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OD347_RS09105 yfmH 1780994..1782280 (+) 1287 WP_065521269.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  OD347_RS09110 ymfI 1782339..1783067 (+) 729 WP_088613854.1 elongation factor P 5-aminopentanone reductase -
  OD347_RS09115 - 1783143..1783400 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  OD347_RS09120 - 1783528..1784319 (+) 792 WP_013352314.1 YmfK family protein -
  OD347_RS09125 - 1784338..1785225 (+) 888 WP_071346793.1 RodZ domain-containing protein -
  OD347_RS09130 pgsA 1785299..1785880 (+) 582 WP_013352316.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  OD347_RS09135 cinA 1785898..1787148 (+) 1251 WP_088612824.1 competence/damage-inducible protein A Machinery gene
  OD347_RS09140 recA 1787319..1788362 (+) 1044 WP_013352318.1 recombinase RecA Machinery gene
  OD347_RS09145 - 1788529..1789704 (+) 1176 WP_088612825.1 serine hydrolase -
  OD347_RS09150 rny 1789995..1791554 (+) 1560 WP_003154140.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 44945.28 Da        Isoelectric Point: 5.1452

>NTDB_id=737942 OD347_RS09135 WP_088612824.1 1785898..1787148(+) (cinA) [Bacillus velezensis strain LT-2]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDLIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFRSIEEYFAKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYMLLPGPPSEL
RPMFENEAKPLLLKKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADKKETERLL
KETEAAILERVGEFFYGYDDTSLVKELSKACRQNGITISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQNVLG
VKAETLAESGAVSKECAKELAAGVRKLTGSDIGISFTGVAGPDPQEGHAPGLVFIGISAEGKEEVHEFNFAGSRTGIRKR
AAKYGCHLILKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=737942 OD347_RS09135 WP_088612824.1 1785898..1787148(+) (cinA) [Bacillus velezensis strain LT-2]
ATGGAAATAGCAAAAAAAGCGGAAATCATTGCAGTCGGCTCAGAGCTTCTGCTCGGCCAGATCGCTAATACGAATGCGCA
GTTTATCAGTAAAGAGCTGGCGGAAATCGGAGTAAATGTGTTTTATCATACTGCTGTCGGAGACAATCCGGAGCGGCTTA
AGCAAGTCATCCGCATTGCGGAAGAGCGCTCAGACCTGATTATTTTTTCCGGCGGCCTCGGACCGACCAAGGACGATTTA
ACAAAAGAAACCATTGCAAACACTTTGGGGCGCCCGCTCGTTCTGAATGACGAAGCGTTCCGGTCGATTGAAGAGTATTT
CGCGAAAACAAAACGGACAATGTCGCCGAATAATCGCAAACAGGCGCTCGTAATTGAGGGCTCAGACGTTTTGGCGAATC
ATTTCGGCATGGCGCCGGGAATGCTTGCAGAGCACGGCTCAAGACTTTATATGCTGCTCCCTGGGCCGCCGAGCGAGCTG
CGTCCGATGTTTGAAAATGAAGCGAAGCCGCTGCTTCTTAAAAAGCTCGGTTCAAATGAGAAGATCGTTTCAACCGTGCT
GCGGTTTTTCGGAATCGGTGAATCGCAGCTTGAAGCTGACTTAGAAGATATCATTGATGCGCAGACGAACCCGACGATTG
CGCCGCTTGCTGCCGACGGCGAGGTTACGCTGCGTTTAACGGCAAAACATGCCGACAAAAAAGAAACAGAGCGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTGGAACGTGTCGGTGAATTTTTCTACGGATATGATGATACGTCGCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAAAACGGAATCACGATTTCCTCTGCCGAAAGCTTTACCGGCGGCCTGTTTTCAGAGTGGGTGA
CTGATTTAAGCGGCGCGTCTCAACTATTTGCAGGGGGCGTTGTCTGCTATTCCGACAGCGTGAAACAAAATGTGCTCGGC
GTGAAAGCTGAAACGCTCGCTGAAAGCGGAGCGGTCAGCAAAGAGTGCGCGAAAGAGCTTGCCGCCGGTGTTAGAAAGCT
GACCGGAAGCGATATCGGCATCAGCTTTACCGGAGTTGCGGGCCCCGATCCGCAGGAAGGGCATGCCCCGGGCCTCGTCT
TTATCGGTATTTCCGCGGAAGGAAAAGAAGAGGTGCACGAATTTAACTTTGCCGGCTCAAGAACCGGAATCAGAAAGCGC
GCCGCTAAATACGGCTGCCATCTTATTTTGAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Competence-damaged protein (CinA)

(261-413)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

90.385

100

0.904
  cinA Streptococcus mitis NCTC 12261

47.847

100

0.481
  cinA Streptococcus mitis SK321

47.368

100

0.476
  cinA Streptococcus pneumoniae TIGR4

46.89

100

0.471
  cinA Streptococcus pneumoniae Rx1

46.89

100

0.471
  cinA Streptococcus pneumoniae R6

46.89

100

0.471
  cinA Streptococcus pneumoniae D39

46.651

100

0.469
  cinA Streptococcus mutans UA159

46.489

99.279

0.462
  cinA Streptococcus suis isolate S10

40.409

93.99

0.38