Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ODQ18_RS06635 Genome accession   NZ_CP107039
Coordinates   1280264..1281514 (-) Length   416 a.a.
NCBI ID   WP_043940119.1    Uniprot ID   -
Organism   Bacillus subtilis strain 11060     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1275264..1286514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODQ18_RS06620 (ODQ18_06620) rny 1275864..1277426 (-) 1563 WP_003221010.1 ribonuclease Y -
  ODQ18_RS06625 (ODQ18_06625) pbpX 1277702..1278877 (-) 1176 WP_032725712.1 serine hydrolase domain-containing protein -
  ODQ18_RS06630 (ODQ18_06630) recA 1279045..1280091 (-) 1047 WP_003245789.1 recombinase RecA Machinery gene
  ODQ18_RS06635 (ODQ18_06635) cinA 1280264..1281514 (-) 1251 WP_043940119.1 competence/damage-inducible protein A Machinery gene
  ODQ18_RS06640 (ODQ18_06640) pgsA 1281532..1282113 (-) 582 WP_003244753.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ODQ18_RS06645 (ODQ18_06645) rodZ 1282163..1283077 (-) 915 WP_021479276.1 cell shape determination protein RodZ -
  ODQ18_RS06650 (ODQ18_06650) - 1283096..1283887 (-) 792 WP_003220998.1 DUF3388 domain-containing protein -
  ODQ18_RS06655 (ODQ18_06655) ymfJ 1284017..1284274 (-) 258 WP_003245199.1 DUF3243 domain-containing protein -
  ODQ18_RS06660 (ODQ18_06660) ymfI 1284355..1285083 (-) 729 WP_043940118.1 elongation factor P 5-aminopentanone reductase -
  ODQ18_RS06665 (ODQ18_06665) yfmH 1285138..1286424 (-) 1287 WP_043940117.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45509.90 Da        Isoelectric Point: 5.5155

>NTDB_id=737632 ODQ18_RS06635 WP_043940119.1 1280264..1281514(-) (cinA) [Bacillus subtilis strain 11060]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHESRYYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSIACKEKGITISAAESFTGGLFSEWLTDHSGASKLFAGGVVCYTNAVKQNVLG
VKKETLDRFGAVSKECASELAKGVQKLTGCDIGISFTGVAGPDAQEGHEPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
GAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=737632 ODQ18_RS06635 WP_043940119.1 1280264..1281514(-) (cinA) [Bacillus subtilis strain 11060]
ATGGAATTTCCAAAAAAAGCAGAAATAATTGCAGTCGGTTCAGAGCTGCTGCTTGGCCAAATCGCCAATACAAATGCTCA
ATTTATCAGCAAACAGCTCGCTGAAATCGGGGTCAACGTATTTTATCATACAGCGGTCGGAGATAACCCGGAGCGGCTGA
AGCAGGTCATCCGCATTGCTGAAGAACGCTCTGACTTCATTATTTTTTCAGGAGGGCTTGGACCCACAAAAGATGATCTG
ACGAAAGAAACGATTGCAAATACGCTGGGACGTCCGCTTGTGTTAAATGATGAGGCATTCCAATCCATTGAGGACTATTT
CAAACGAACAAAACGCACGATGTCACCTAATAACCGAAAACAGGCGCTTGTGATCGAAGGTTCTGACGTGCTGGCGAATC
ACTTTGGAATGGCCCCGGGAATGCTCACAGAGCATGAATCGCGCTATTATATGCTTCTTCCTGGACCGCCGAGCGAATTG
CGTCCAATGTTTGAAAACGAGGCAAAGCCTCTTCTGCTGAAAAAGATGGGTTCAAATGAAAAAATTGTGTCAACCGTTCT
TCGCTTTTTCGGTATCGGTGAATCTCAGCTTGAAGCCGATTTGGAAGATATTATTGATGCGCAAACCAATCCGACAATTG
CGCCTTTGGCGGCTGATGGAGAGGTGACGCTGCGTCTGACAGCCAAACACGCCGATGAAAAGGAAACAGAGCGTCTGTTA
AAAGAAACAGAGGCCGTTATCTTAGAGCGTGTCGGTGAATTTTTCTATGGTTACGATGATACTTCTCTTGTAAAAGAGCT
ATCTATAGCGTGCAAGGAAAAAGGCATTACAATTTCTGCGGCAGAAAGTTTTACCGGAGGGCTGTTTTCTGAATGGCTGA
CGGATCATAGCGGTGCCTCAAAATTATTTGCCGGGGGCGTTGTTTGCTATACAAACGCCGTGAAGCAGAATGTGCTTGGT
GTCAAGAAGGAAACATTAGATCGTTTTGGGGCGGTCAGCAAGGAGTGCGCATCCGAACTGGCTAAGGGTGTTCAAAAACT
CACTGGCTGCGATATCGGCATTAGCTTTACTGGTGTAGCAGGACCTGATGCTCAAGAAGGGCATGAGCCTGGGCATGTGT
TTATCGGCATTTCCGCAAATGGTAAAGAAGAGGTTCACGAGTTTCACTTTGCGGGCTCCAGAACGGGGATCAGAAAACGC
GGCGCTAAATACGGCTGCCATTTAATCTTAAAGCTTTTAGAGCAAAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Competence-damaged protein (CinA)

(262-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

99.519

100

0.995
  cinA Streptococcus mitis SK321

45.455

100

0.457
  cinA Streptococcus mitis NCTC 12261

45.455

100

0.457
  cinA Streptococcus mutans UA159

46.005

99.279

0.457
  cinA Streptococcus pneumoniae TIGR4

45.215

100

0.454
  cinA Streptococcus pneumoniae Rx1

44.976

100

0.452
  cinA Streptococcus pneumoniae R6

44.976

100

0.452
  cinA Streptococcus pneumoniae D39

44.737

100

0.45
  cinA Streptococcus suis isolate S10

41.379

90.625

0.375