Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACRAD_RS00710 Genome accession   NZ_AP019740
Coordinates   147570..148700 (-) Length   376 a.a.
NCBI ID   WP_005023662.1    Uniprot ID   -
Organism   Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 142570..153700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACRAD_RS00680 (ACRAD_01290) - 142688..143029 (-) 342 WP_005023667.1 RcnB family protein -
  ACRAD_RS00685 (ACRAD_01300) - 143224..143766 (-) 543 WP_005023666.1 glutathione peroxidase -
  ACRAD_RS00690 (ACRAD_01310) - 143893..144516 (-) 624 WP_005023665.1 hypothetical protein -
  ACRAD_RS00695 (ACRAD_01320) - 144731..145486 (-) 756 WP_005023664.1 helix-turn-helix transcriptional regulator -
  ACRAD_RS00700 (ACRAD_01330) - 145602..146495 (+) 894 WP_005017258.1 DMT family transporter -
  ACRAD_RS00705 (ACRAD_01340) - 146956..147525 (-) 570 WP_005023663.1 L-threonylcarbamoyladenylate synthase -
  ACRAD_RS00710 (ACRAD_01350) dprA 147570..148700 (-) 1131 WP_005023662.1 DNA-processing protein DprA Machinery gene
  ACRAD_RS00715 (ACRAD_01360) tsaP 148716..149864 (-) 1149 WP_005023661.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ACRAD_RS00720 (ACRAD_01370) def 149989..150519 (+) 531 WP_005017251.1 peptide deformylase -
  ACRAD_RS00725 (ACRAD_01380) - 150612..151034 (+) 423 WP_010700342.1 DUF2946 family protein -
  ACRAD_RS00730 (ACRAD_01390) - 151100..153163 (+) 2064 WP_005023659.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41813.62 Da        Isoelectric Point: 6.5819

>NTDB_id=73727 ACRAD_RS00710 WP_005023662.1 147570..148700(-) (dprA) [Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413]
MIAELSQLHYHSLKLWYLVQHSVSSFNQLVEYFGSAEQATTPAALARWGNLKLHANHSKRAQEFYSATGQAEFEQLTQRV
LASCDFILVPEDILYPQQLHPYTDKPPILFGQGSAQALSQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFYITSGLALG
IDEAAHQGALQHQRTIAVVGTGLDLVYPAHNRKLQEQILQYGGTILSEFLPGTQPLKHHFPRRNRIVSGLSLGVLVAEAA
LESGSLITAQRAADQGKIIFAIPGHIYSEHHQGCHQLIREGAILVDHPEQLIEDLALPTQWHSQQQKVSSVPEPAQVPEH
LFELYQQLDWVGLDLDQIALKLPLPAAELTGHLMELELLGLCVQQSGRYLRCRPGF

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=73727 ACRAD_RS00710 WP_005023662.1 147570..148700(-) (dprA) [Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 strain NBRC 102413]
ATGATTGCCGAATTATCGCAGCTTCATTATCACAGTCTGAAGCTGTGGTATTTGGTCCAGCATTCAGTTTCAAGTTTTAA
TCAGCTGGTTGAGTATTTTGGTAGTGCTGAACAGGCAACCACTCCGGCAGCATTAGCGCGCTGGGGCAATTTAAAACTGC
ATGCCAATCATTCCAAGCGGGCACAGGAATTTTATAGCGCAACCGGTCAGGCTGAGTTTGAGCAACTGACCCAACGGGTA
CTGGCAAGTTGCGATTTTATTTTAGTGCCGGAAGATATACTGTATCCGCAGCAGCTGCACCCTTATACAGATAAGCCTCC
GATCCTGTTTGGCCAAGGTTCTGCTCAAGCCTTAAGTCAACCCCAGATCGCGATTGTAGGCAGTCGCAAACCAAGCCCGC
ATGGCCGGCAAGTAGCCTACGACTTTGCGTATTATCTGAGTGAAAAAGGGTTTTATATTACCAGTGGACTTGCCTTGGGA
ATTGACGAGGCAGCACATCAAGGGGCATTGCAGCATCAGCGTACTATTGCTGTAGTCGGAACCGGACTGGATCTGGTCTA
TCCAGCCCATAACCGTAAGCTTCAAGAACAGATACTTCAATACGGCGGTACAATCCTCAGTGAATTTTTACCGGGAACCC
AACCACTCAAGCATCATTTTCCACGCCGTAACCGTATTGTCAGTGGTTTGAGTCTAGGTGTACTGGTGGCAGAAGCCGCT
TTAGAAAGTGGTTCATTGATTACTGCACAGCGTGCGGCCGATCAGGGCAAGATTATTTTTGCCATTCCCGGCCATATCTA
CAGCGAGCATCATCAAGGCTGTCATCAACTCATCCGTGAAGGCGCCATACTGGTAGATCATCCGGAACAGCTGATTGAAG
ATCTGGCTTTACCGACCCAGTGGCACAGCCAGCAACAAAAGGTAAGCAGTGTACCCGAGCCGGCACAGGTACCTGAACAT
CTATTTGAACTGTACCAACAACTAGACTGGGTAGGACTGGATCTAGACCAGATTGCTCTTAAATTGCCATTACCTGCGGC
TGAATTGACCGGACATCTGATGGAACTTGAGTTACTTGGACTATGTGTTCAGCAATCTGGGCGCTATCTGCGTTGCCGTC
CGGGCTTTTAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(324-367)

DNA recombination-mediator protein A (DNA_processg_A)

(87-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

67.989

100

0.684
  dprA Acinetobacter baumannii D1279779

67.989

100

0.684
  dprA Acinetobacter baylyi ADP1

65.526

100

0.662
  dprA Neisseria meningitidis strain C311

37.783

100

0.399
  dprA Neisseria meningitidis MC58

37.783

100

0.399
  dprA Neisseria gonorrhoeae MS11

36.951

100

0.38
  dprA Neisseria gonorrhoeae strain FA1090

36.693

100

0.378
  dprA Vibrio cholerae strain A1552

43.038

84.043

0.362

Multiple sequence alignment