Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   N7L95_RS12590 Genome accession   NZ_CP106951
Coordinates   2854024..2855124 (+) Length   366 a.a.
NCBI ID   WP_301260144.1    Uniprot ID   -
Organism   Eleftheria terrae strain P9846-PB     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2849024..2860124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7L95_RS12560 (N7L95_12580) - 2849136..2849564 (-) 429 WP_301255586.1 TfoX/Sxy family protein -
  N7L95_RS12565 (N7L95_12585) - 2849628..2850044 (-) 417 WP_363324836.1 hypothetical protein -
  N7L95_RS12570 (N7L95_12590) htpX 2850110..2850967 (-) 858 WP_301255587.1 zinc metalloprotease HtpX -
  N7L95_RS12575 (N7L95_12595) fmt 2851019..2851978 (-) 960 WP_301255588.1 methionyl-tRNA formyltransferase -
  N7L95_RS12580 (N7L95_12600) def 2852073..2852588 (-) 516 WP_301255589.1 peptide deformylase -
  N7L95_RS12585 (N7L95_12605) - 2852831..2854000 (+) 1170 WP_301255590.1 LysM domain-containing protein -
  N7L95_RS12590 (N7L95_12610) dprA 2854024..2855124 (+) 1101 WP_301260144.1 DNA-processing protein DprA Machinery gene
  N7L95_RS12595 (N7L95_12615) - 2855209..2855661 (+) 453 WP_301255591.1 DUF494 domain-containing protein -
  N7L95_RS12600 (N7L95_12620) - 2855732..2858104 (-) 2373 WP_301255592.1 DUF1631 family protein -
  N7L95_RS12605 (N7L95_12625) secF 2858149..2859159 (-) 1011 WP_301255594.1 protein translocase subunit SecF -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 37508.83 Da        Isoelectric Point: 6.0889

>NTDB_id=736793 N7L95_RS12590 WP_301260144.1 2854024..2855124(+) (dprA) [Eleftheria terrae strain P9846-PB]
MERDELAAWLRLLGTPGIGSESARRLLATFASPQAVFQASEAALRRVVSATQAAALAAPPADLPALLDTTTAWLAASADR
HLLALGDPAYPALLLATADPPLLLYAQGRLDWLRPPAVAVVGSRNPTRPGADHARAFAAALSQAGQVVVSGLALGIDGAA
HEGALDAGGATIAVVGTGLDRVYPARHQALAHRIAGHGLLLSEYPLGTPPLAANFPRRNRIISGLAQGTLVVEAALQSGS
LITARMAAEQGREVFAIPGSIHSPQSRGCHLLIKQGAKLVESAADILEELQAPAAPATAGLPQGGPEGDDGDPVLAALGW
EPGSLDALVARTGWPAAELSARLLELELSGQVARLPGQLFQRIASA

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=736793 N7L95_RS12590 WP_301260144.1 2854024..2855124(+) (dprA) [Eleftheria terrae strain P9846-PB]
ATCGAGCGCGACGAACTGGCTGCCTGGCTGCGGCTGCTCGGCACCCCGGGCATCGGCAGCGAATCCGCACGCCGCCTGTT
GGCGACGTTTGCGTCTCCACAGGCCGTCTTCCAGGCTTCGGAAGCGGCCCTGCGCCGGGTGGTGTCCGCCACCCAGGCGG
CTGCCCTTGCCGCCCCGCCCGCCGATCTCCCGGCCCTGCTCGACACCACCACCGCCTGGCTGGCCGCCTCGGCCGACCGC
CACCTGCTGGCGCTGGGCGACCCCGCCTACCCGGCCCTGCTGCTGGCCACCGCGGATCCGCCACTGCTGTTGTACGCCCA
GGGCCGCCTCGACTGGCTGCGGCCCCCCGCGGTCGCGGTGGTCGGCAGCCGCAACCCCACCCGCCCGGGAGCCGATCATG
CCCGCGCCTTCGCTGCGGCCCTGAGCCAGGCCGGCCAGGTGGTCGTCTCCGGCCTGGCGCTCGGCATCGACGGCGCCGCC
CATGAAGGGGCGCTGGACGCAGGAGGCGCCACCATCGCGGTGGTCGGCACCGGGCTCGACCGGGTTTATCCAGCGCGTCA
CCAGGCGCTGGCCCACCGCATCGCGGGCCACGGCCTGCTGCTGAGCGAGTACCCGCTTGGCACGCCGCCGCTGGCGGCGA
ACTTTCCGCGGCGCAACCGCATCATCTCGGGCCTGGCGCAGGGCACCCTGGTGGTGGAAGCCGCCCTGCAGTCCGGCTCG
CTGATCACCGCCCGGATGGCGGCCGAGCAAGGCCGCGAGGTCTTTGCCATACCGGGCTCCATCCACTCGCCGCAGTCGCG
CGGCTGCCACTTGCTGATCAAGCAGGGCGCCAAGCTGGTGGAAAGCGCCGCCGACATCCTCGAAGAACTGCAGGCGCCGG
CCGCCCCGGCAACGGCCGGCCTGCCGCAGGGCGGCCCCGAGGGCGACGACGGCGACCCGGTCCTGGCGGCCCTGGGCTGG
GAACCGGGCAGCCTCGATGCGCTGGTCGCACGCACCGGATGGCCGGCGGCGGAGCTGAGCGCCCGGCTGCTCGAACTGGA
GCTGAGCGGCCAGGTGGCGCGGCTGCCAGGCCAGCTCTTCCAGCGCATTGCGTCGGCCTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(79-281)

DprA winged helix domain (DprA_WH)

(293-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria meningitidis strain C311

44.697

100

0.484
  dprA Neisseria meningitidis MC58

44.697

100

0.484
  dprA Neisseria gonorrhoeae MS11

43.401

100

0.467
  dprA Neisseria gonorrhoeae strain FA1090

43.147

100

0.464
  dprA Vibrio campbellii strain DS40M4

45.187

100

0.462
  dprA Vibrio cholerae strain A1552

44.385

100

0.454
  dprA Legionella pneumophila strain ERS1305867

50.336

81.421

0.41
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.517

95.082

0.385
  dprA Haemophilus influenzae Rd KW20

46.233

79.781

0.369
  dprA Acinetobacter baylyi ADP1

45.833

78.689

0.361