Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   OE104_RS05555 Genome accession   NZ_CP106878
Coordinates   1117956..1119206 (+) Length   416 a.a.
NCBI ID   WP_275418585.1    Uniprot ID   -
Organism   Fervidibacillus albus strain MEBiC13591     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1112956..1124206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OE104_RS05530 (OE104_05530) ymfI 1114197..1114931 (+) 735 WP_275418580.1 elongation factor P 5-aminopentanone reductase -
  OE104_RS05535 (OE104_05535) - 1115009..1115266 (+) 258 WP_275418581.1 DUF3243 domain-containing protein -
  OE104_RS05540 (OE104_05540) - 1115517..1116302 (+) 786 WP_275418582.1 DUF3388 domain-containing protein -
  OE104_RS05545 (OE104_05545) - 1116323..1117240 (+) 918 WP_275418583.1 helix-turn-helix domain-containing protein -
  OE104_RS05550 (OE104_05550) pgsA 1117338..1117916 (+) 579 WP_275418584.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  OE104_RS05555 (OE104_05555) cinA 1117956..1119206 (+) 1251 WP_275418585.1 competence/damage-inducible protein A Machinery gene
  OE104_RS05560 (OE104_05560) - 1119294..1120028 (-) 735 WP_275418586.1 P-II family nitrogen regulator -
  OE104_RS05565 (OE104_05565) - 1119982..1120752 (-) 771 WP_275418587.1 DUF1538 domain-containing protein -
  OE104_RS05570 (OE104_05570) - 1120749..1121441 (-) 693 WP_275418588.1 DUF1538 domain-containing protein -
  OE104_RS05575 (OE104_05575) - 1121701..1123998 (-) 2298 WP_275418589.1 thiamine pyrophosphate-dependent enzyme -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 46117.25 Da        Isoelectric Point: 9.2538

>NTDB_id=736366 OE104_RS05555 WP_275418585.1 1117956..1119206(+) (cinA) [Fervidibacillus albus strain MEBiC13591]
MNAEIIAVGSELLLGQIANTNAKFLSKELASIGINVYFHTVVGDNRNRLKEAVEVAKQRSQVIILTGGLGPTKDDLTKET
IAEIVQKPLILDERSFQSIQTFFEKMNRPMTDNNKKQAYVLADSEVLPNDTGMAPGMVFTKKDVTYMLLPGPPSEMEPMF
QKYGKRSLLKRLNDLQTIESRVLRFFGIGEAALEKEIEDLIDHQMNPTIAPLAADGEVTLRLTAKHADPTRRKEMLDRVE
KRILLRVGSYFYGYGETTVMQEMANVLNKKKKKIAVAESLTGGLFQEELTSIPGASEWFQGGIVSYTNDVKTDVLGVQKR
TINTFGAVSEQCAVEMAENVRTMMKADIGISFTGVAGPSPSEGKNPGTVYIGISIKGEVPKAYEYHLFGDRQAVRIRAVK
TGAWKILKRCKGMNNQ

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=736366 OE104_RS05555 WP_275418585.1 1117956..1119206(+) (cinA) [Fervidibacillus albus strain MEBiC13591]
ATGAATGCGGAAATTATTGCCGTTGGTTCGGAATTGCTATTAGGACAAATCGCAAATACGAATGCGAAATTCCTTTCGAA
GGAGTTAGCTTCCATCGGTATCAATGTGTATTTTCACACCGTTGTCGGAGATAATCGAAATCGATTAAAAGAGGCTGTCG
AGGTTGCAAAACAACGGTCGCAAGTCATTATATTAACGGGTGGTTTAGGACCGACGAAGGATGATTTAACGAAGGAAACA
ATCGCAGAAATTGTACAGAAACCGTTAATATTGGATGAGCGATCATTCCAATCGATCCAAACGTTTTTCGAAAAAATGAA
TCGACCGATGACCGATAATAATAAAAAACAGGCGTACGTTCTCGCTGACAGTGAAGTATTGCCGAATGATACGGGAATGG
CACCGGGAATGGTTTTCACGAAAAAGGATGTTACGTACATGTTATTGCCCGGTCCGCCATCAGAAATGGAGCCGATGTTT
CAAAAATATGGAAAACGTTCTTTGTTGAAACGATTAAACGACTTGCAAACGATCGAATCGAGGGTTTTACGATTTTTCGG
TATCGGGGAAGCTGCTCTTGAAAAGGAAATTGAAGACTTGATCGATCACCAAATGAATCCGACCATAGCCCCTTTAGCAG
CTGATGGGGAAGTGACGTTACGATTGACAGCGAAACATGCCGATCCTACGAGACGAAAGGAAATGCTCGACCGAGTGGAG
AAACGGATTTTATTACGTGTCGGCTCATATTTTTACGGCTATGGTGAAACGACCGTTATGCAAGAAATGGCTAATGTATT
GAATAAAAAGAAGAAAAAGATAGCTGTGGCGGAAAGCTTGACTGGAGGATTATTTCAAGAAGAACTCACATCCATCCCCG
GTGCCAGCGAATGGTTCCAAGGGGGGATCGTTTCCTATACGAACGACGTGAAGACTGACGTTTTGGGCGTTCAAAAACGG
ACGATTAATACGTTTGGAGCAGTTAGTGAACAATGTGCGGTGGAAATGGCGGAAAACGTACGGACGATGATGAAAGCGGA
TATAGGAATTAGCTTTACGGGAGTAGCAGGACCGTCTCCGTCGGAAGGGAAAAATCCAGGAACAGTCTATATCGGCATTT
CTATTAAAGGAGAAGTGCCAAAAGCGTATGAATACCATTTGTTTGGAGATCGTCAAGCAGTTCGAATTCGGGCTGTGAAA
ACGGGCGCGTGGAAAATATTGAAACGATGCAAGGGAATGAATAATCAATAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-403)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

56.897

97.596

0.555
  cinA Streptococcus mitis SK321

46.214

92.067

0.425
  cinA Streptococcus mutans UA159

46.438

91.106

0.423
  cinA Streptococcus pneumoniae TIGR4

45.953

92.067

0.423
  cinA Streptococcus mitis NCTC 12261

45.953

92.067

0.423
  cinA Streptococcus pneumoniae Rx1

45.692

92.067

0.421
  cinA Streptococcus pneumoniae R6

45.692

92.067

0.421
  cinA Streptococcus pneumoniae D39

45.431

92.067

0.418
  cinA Streptococcus suis isolate S10

41.161

91.106

0.375