Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OCF84_RS01795 Genome accession   NZ_CP106874
Coordinates   382109..383380 (-) Length   423 a.a.
NCBI ID   WP_282895170.1    Uniprot ID   -
Organism   Shewanella xiamenensis strain FH-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 377109..388380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCF84_RS01760 (OCF84_01760) - 377171..378097 (+) 927 WP_257747952.1 exopolyphosphatase -
  OCF84_RS01765 (OCF84_01765) - 378172..378708 (-) 537 WP_011070769.1 thioredoxin family protein -
  OCF84_RS01770 (OCF84_01770) mutT 378852..379247 (-) 396 WP_037413635.1 8-oxo-dGTP diphosphatase MutT -
  OCF84_RS01775 (OCF84_01775) yacG 379334..379543 (-) 210 WP_257748050.1 DNA gyrase inhibitor YacG -
  OCF84_RS01780 (OCF84_01780) zapD 379611..380345 (-) 735 WP_257747948.1 cell division protein ZapD -
  OCF84_RS01785 (OCF84_01785) coaE 380338..380955 (-) 618 WP_047534370.1 dephospho-CoA kinase -
  OCF84_RS01790 (OCF84_01790) pilD 381094..382020 (-) 927 WP_257747944.1 A24 family peptidase Machinery gene
  OCF84_RS01795 (OCF84_01795) pilC 382109..383380 (-) 1272 WP_282895170.1 type II secretion system F family protein Machinery gene
  OCF84_RS01800 (OCF84_01800) pilB 383478..385187 (-) 1710 WP_282895171.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OCF84_RS01805 (OCF84_01805) - 385504..386931 (+) 1428 WP_282895172.1 O-antigen ligase family protein -
  OCF84_RS01810 (OCF84_01810) - 386982..387407 (-) 426 WP_282895173.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46039.27 Da        Isoelectric Point: 10.2290

>NTDB_id=736287 OCF84_RS01795 WP_282895170.1 382109..383380(-) (pilC) [Shewanella xiamenensis strain FH-1]
MATATTTKKPRSKKIEQKSQPKIYTFEWKGVNRDGQKTSGELRGASAAEIRSQLKSQGVNPKTVRKQSAALFKLGDAKIT
PMDIAMVTRQVATMLAAGVPLVTTIELLGRGHEKAKMRELLATILSEIQSGIPLSDALRPHRRYFDDLYVDLVAAGEHSG
SLDVVFDRIATYREKSEALKSKIKKAMFYPAAVVIVAILVTALLLLFVVPQFEDIFKGFGAELPAFTQLVLHISRGLQSS
WYIFLGAIVAGVFLFVRAHRNSQIVRDRVDEVILKIPAIGPILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAV
YRKAILKIRQEVMAGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVSTIYEMQVDDAVDGLSSLIEPIMMVVIG
TVVGGLIVAMYLPIFQMGKVVGG

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=736287 OCF84_RS01795 WP_282895170.1 382109..383380(-) (pilC) [Shewanella xiamenensis strain FH-1]
ATGGCTACGGCAACGACAACAAAAAAGCCTCGGTCTAAAAAAATCGAGCAAAAAAGCCAACCTAAAATTTATACCTTTGA
ATGGAAAGGTGTTAATCGCGACGGTCAGAAAACCAGTGGTGAGCTGAGGGGGGCTTCTGCGGCCGAAATCCGCAGTCAGC
TCAAATCTCAAGGAGTAAATCCTAAAACCGTACGCAAACAATCGGCCGCCCTGTTTAAATTAGGCGATGCCAAAATCACT
CCCATGGATATTGCTATGGTAACTCGGCAAGTTGCTACTATGCTTGCCGCTGGGGTGCCATTGGTGACCACAATTGAATT
ACTGGGTCGCGGCCATGAAAAAGCAAAAATGCGTGAGCTGCTGGCAACGATTCTTTCAGAAATCCAATCGGGTATTCCAT
TGTCCGATGCTTTGCGTCCCCACCGACGATATTTTGATGATCTTTATGTCGATTTAGTTGCGGCGGGTGAACATTCAGGC
TCACTCGATGTCGTGTTTGATCGTATTGCGACCTACCGTGAAAAATCTGAGGCATTAAAGTCAAAAATTAAAAAGGCCAT
GTTTTATCCGGCAGCAGTAGTAATAGTCGCTATTTTAGTAACTGCACTATTACTACTGTTTGTAGTGCCACAATTTGAAG
ATATTTTTAAAGGCTTTGGCGCCGAGCTACCAGCATTTACCCAATTGGTGTTGCATATCTCCCGCGGCCTACAATCCTCT
TGGTATATCTTTTTGGGCGCGATTGTGGCTGGTGTGTTTTTATTTGTCCGCGCCCACCGAAACTCACAGATAGTGAGGGA
TAGAGTGGATGAAGTCATTTTAAAAATTCCGGCTATCGGACCAATTTTACATAAAGGCGCTATGGCACGTTTTGCCCGCA
CTTTAGCTACCACCTTTGCAGCGGGTGTACCCTTAATTGACGGCTTAGAATCCGCCGCTGGGGCATCGGGCAATGCGGTA
TACCGTAAGGCTATCTTAAAAATCCGCCAAGAAGTGATGGCCGGGATGCAAATGAACGTGGCCATGCGGACCACAGGGCT
GTTCCCCGATATGTTGATCCAAATGGTGATGATTGGCGAAGAATCTGGCTCGCTCGATAATATGCTCAATAAGGTTTCAA
CCATCTATGAGATGCAAGTAGACGACGCTGTCGATGGTTTATCCAGCCTAATTGAACCCATTATGATGGTGGTGATTGGT
ACTGTTGTTGGTGGCCTTATTGTCGCTATGTATTTACCTATCTTCCAAATGGGTAAAGTGGTTGGCGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)

Type II secretion system (T2SS), protein F (T2SSF)

(88-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.556

93.617

0.52
  pilC Legionella pneumophila strain ERS1305867

50.248

95.508

0.48
  pilC Acinetobacter baumannii D1279779

50.503

94.09

0.475
  pilC Acinetobacter baylyi ADP1

50.378

93.853

0.473
  pilC Vibrio cholerae strain A1552

48.12

94.326

0.454
  pilC Vibrio campbellii strain DS40M4

44.499

96.69

0.43
  pilG Neisseria meningitidis 44/76-A

41.542

95.035

0.395
  pilG Neisseria gonorrhoeae MS11

41.542

95.035

0.395