Detailed information NTG0736286

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OCF84_RS01790
• Genome accession: NZ_CP106874
• Coordinates: 381094..382020 (-)
• Length: 308 a.a.
• NCBI ID: WP_257747944.1
• Uniprot ID: -
• Organism: Shewanella xiamenensis strain FH-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 376094..387020

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCF84_RS01760 (OCF84_01760)	-	377171..378097 (+)	927	WP_257747952.1	exopolyphosphatase	-
OCF84_RS01765 (OCF84_01765)	-	378172..378708 (-)	537	WP_011070769.1	thioredoxin family protein	-
OCF84_RS01770 (OCF84_01770)	mutT	378852..379247 (-)	396	WP_037413635.1	8-oxo-dGTP diphosphatase MutT	-
OCF84_RS01775 (OCF84_01775)	yacG	379334..379543 (-)	210	WP_257748050.1	DNA gyrase inhibitor YacG	-
OCF84_RS01780 (OCF84_01780)	zapD	379611..380345 (-)	735	WP_257747948.1	cell division protein ZapD	-
OCF84_RS01785 (OCF84_01785)	coaE	380338..380955 (-)	618	WP_047534370.1	dephospho-CoA kinase	-
OCF84_RS01790 (OCF84_01790)	pilD	381094..382020 (-)	927	WP_257747944.1	A24 family peptidase	Machinery gene
OCF84_RS01795 (OCF84_01795)	pilC	382109..383380 (-)	1272	WP_282895170.1	type II secretion system F family protein	Machinery gene
OCF84_RS01800 (OCF84_01800)	pilB	383478..385187 (-)	1710	WP_282895171.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OCF84_RS01805 (OCF84_01805)	-	385504..386931 (+)	1428	WP_282895172.1	O-antigen ligase family protein	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34589.19 Da
• Isoelectric Point: 7.7258

>NTDB_id=736286 OCF84_RS01790 WP_257747944.1 381094..382020(-) (pilD) [Shewanella xiamenensis strain FH-1]
MTEFFTLLGHTFDQAPWLFILLSFVFASTIGSFLNVVIHRFPVMMKREWQQECNQYLQEYHADIVKQVGIEKLNKPIDHY
PPKYNLVVPGSACPKCKTAIKPWHNLPMLGWLMLRGKCAACNAPISSRYPIIELITGLLVATLAWHFGPSWQFIFAAILT
FVLIALTGIDLDEMLLPDQMTLPLLWLGLLINLNHTFTNPTDAIIGAAVGYLSLWSIFWLFKLLTGKEGMGYGDFKLLAV
FGAWLGWQMLPLVILLSSLVGALVGITLIVTKRNQLANPIPFGPYIAAAGWIALIWGQPIVDWYLSTL

Nucleotide

• Length: 927 bp

>NTDB_id=736286 OCF84_RS01790 WP_257747944.1 381094..382020(-) (pilD) [Shewanella xiamenensis strain FH-1]
ATGACTGAATTTTTCACTTTATTGGGTCACACCTTTGACCAAGCACCGTGGCTTTTTATCTTATTAAGTTTTGTGTTTGC
ATCCACTATTGGCAGCTTTTTAAATGTGGTGATTCACCGCTTTCCGGTGATGATGAAGCGCGAATGGCAACAGGAATGTA
ATCAGTATCTGCAGGAATATCATGCAGATATTGTTAAGCAAGTAGGAATAGAAAAGCTCAATAAACCGATCGATCACTAT
CCTCCCAAATACAATCTAGTGGTACCTGGCTCTGCCTGCCCTAAATGTAAAACCGCCATCAAACCTTGGCATAATTTACC
GATGTTAGGCTGGTTAATGTTGAGGGGAAAATGCGCTGCCTGCAATGCGCCAATCTCCTCACGCTACCCGATTATTGAGT
TAATAACAGGGTTACTCGTTGCAACACTCGCTTGGCATTTTGGGCCAAGCTGGCAATTTATTTTTGCTGCAATATTAACC
TTTGTATTAATTGCATTAACGGGTATCGATCTGGATGAAATGCTACTTCCAGACCAAATGACCCTTCCACTGTTATGGCT
AGGATTACTGATTAACCTCAACCATACCTTTACCAATCCAACCGATGCCATTATCGGTGCTGCTGTTGGCTATTTAAGTT
TATGGTCGATTTTTTGGCTATTTAAGCTGTTAACCGGTAAAGAAGGCATGGGCTATGGTGACTTTAAACTGCTTGCCGTA
TTTGGTGCTTGGCTTGGTTGGCAAATGTTGCCACTGGTGATTTTACTTTCATCCTTAGTGGGTGCCCTCGTTGGCATCAC
GCTGATCGTGACCAAACGTAATCAACTGGCAAATCCGATTCCCTTTGGTCCTTACATTGCCGCCGCAGGTTGGATCGCCC
TAATATGGGGTCAACCTATAGTGGATTGGTACTTAAGCACGTTATAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (25-147)

• Type IV leader peptidase family (Peptidase_A24) (158-266)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.027	96.104	0.5
pilD	Vibrio campbellii strain DS40M4	49.007	98.052	0.481
pilD	Acinetobacter nosocomialis M2	50	94.156	0.471
pilD	Acinetobacter baumannii D1279779	49.655	94.156	0.468
pilD	Neisseria gonorrhoeae MS11	45.329	93.831	0.425