Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   N8888_RS14770 Genome accession   NZ_CP106759
Coordinates   3221236..3222495 (+) Length   419 a.a.
NCBI ID   WP_263175469.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain SG.Y2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3216236..3227495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8888_RS14755 (N8888_14755) - 3217202..3220249 (-) 3048 WP_263175468.1 fused MFS/spermidine synthase -
  N8888_RS14760 (N8888_14760) - 3220428..3220874 (-) 447 WP_053517032.1 pilin -
  N8888_RS14770 (N8888_14770) pilC 3221236..3222495 (+) 1260 WP_263175469.1 type II secretion system F family protein Machinery gene
  N8888_RS14775 (N8888_14775) - 3222502..3223365 (+) 864 WP_053517036.1 A24 family peptidase -
  N8888_RS14780 (N8888_14780) coaE 3223376..3223987 (+) 612 WP_053517038.1 dephospho-CoA kinase -
  N8888_RS14785 (N8888_14785) - 3224042..3224425 (-) 384 WP_053517040.1 hypothetical protein -
  N8888_RS14790 (N8888_14790) - 3224685..3226055 (-) 1371 WP_053517042.1 HAMP domain-containing sensor histidine kinase -
  N8888_RS14795 (N8888_14795) - 3226018..3226695 (-) 678 WP_053517044.1 response regulator transcription factor -
  N8888_RS14800 (N8888_14800) - 3226704..3227177 (-) 474 WP_065175768.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45923.33 Da        Isoelectric Point: 10.1180

>NTDB_id=734583 N8888_RS14770 WP_263175469.1 3221236..3222495(+) (pilC) [Stenotrophomonas maltophilia strain SG.Y2]
MSVSRSAIKKEPVARATMELQPFVWEGTDKRGIKMKGEQLAKNANLLRAELRKQGISPGQVKPKPKPLFGAAGRPVSPKD
IAFFSRQMATMMKSGVPIVSALEIIGSGHKNPRMKKMVDTIRTDIEGGSSLYEAISKHPVQFDELYRNLVRAGESAGVLE
TVLDTIASYKENLEALKGKIKKALFYPAMVLVVAFLVSTILLVWVVPQFEEVFQSFGADLPAFTQMVVNLSRFMVSWWWL
IAIVAIGAVVAIAMTYRRSEKMQHTVDRLILKVPVIGQIMHNSAIARFSRTTAVTFKAGVPLVEALGIVAGATGNKVYGE
AVLRMRDDVSVGYPVNMAMKQLNLFPHMVIQMTGIGEEAGALDTMLFKVAEYYEQEVNNAVDALSSLLEPMIMVFIGTIV
GGLVIAMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=734583 N8888_RS14770 WP_263175469.1 3221236..3222495(+) (pilC) [Stenotrophomonas maltophilia strain SG.Y2]
ATGTCTGTGAGTCGCAGTGCGATCAAGAAGGAGCCCGTGGCCCGCGCCACGATGGAGCTGCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGCATAAAGATGAAGGGCGAGCAGCTGGCGAAAAACGCCAACCTGCTGCGCGCCGAACTGCGCAAAC
AGGGCATCAGCCCGGGCCAGGTCAAGCCCAAGCCGAAGCCGCTGTTCGGTGCGGCTGGCAGGCCGGTCTCGCCGAAGGAC
ATCGCGTTCTTCAGCCGGCAGATGGCCACGATGATGAAGTCCGGCGTGCCGATCGTGTCGGCGCTGGAGATCATCGGCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTGGACACGATCCGCACCGACATCGAGGGCGGCTCGTCGCTGTACGAGG
CCATCAGCAAGCATCCGGTGCAGTTCGATGAGCTCTACCGCAACCTGGTGCGGGCCGGCGAAAGCGCCGGTGTGCTGGAG
ACCGTGCTGGACACCATCGCCTCCTACAAGGAAAACCTGGAGGCGCTGAAGGGCAAGATCAAGAAGGCGCTGTTCTACCC
GGCCATGGTGCTGGTGGTGGCGTTCCTGGTCAGCACGATCCTGCTGGTCTGGGTGGTCCCGCAGTTCGAGGAAGTCTTCC
AGAGCTTCGGCGCCGACCTGCCGGCATTCACCCAGATGGTGGTGAACCTGTCGCGGTTCATGGTGTCGTGGTGGTGGCTG
ATCGCCATCGTCGCCATCGGCGCGGTGGTGGCGATCGCCATGACCTACCGGCGATCGGAGAAGATGCAGCACACCGTCGA
CCGGCTGATCCTGAAGGTGCCGGTGATCGGGCAGATCATGCACAACAGTGCGATCGCCCGCTTCTCCCGCACCACAGCGG
TGACCTTCAAGGCCGGCGTGCCGCTGGTGGAGGCCCTGGGCATCGTCGCCGGCGCCACCGGCAACAAGGTCTACGGCGAG
GCGGTGCTGCGCATGCGCGACGACGTTTCGGTCGGCTATCCGGTCAACATGGCGATGAAGCAGCTGAACCTGTTCCCGCA
CATGGTGATCCAGATGACCGGCATCGGCGAGGAGGCCGGCGCCCTTGACACCATGCTGTTCAAGGTCGCCGAATACTACG
AGCAGGAGGTCAACAACGCCGTGGATGCCTTGAGCAGCCTGCTGGAACCGATGATCATGGTGTTCATTGGTACCATTGTC
GGCGGCCTGGTCATTGCGATGTACCTGCCGATCTTCAAACTGGGCGCCGTCGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.03

94.511

0.501
  pilC Legionella pneumophila strain ERS1305867

52.13

95.227

0.496
  pilC Acinetobacter baylyi ADP1

50.985

96.897

0.494
  pilC Acinetobacter baumannii D1279779

50.614

97.136

0.492
  pilG Neisseria gonorrhoeae MS11

43.577

94.749

0.413
  pilG Neisseria meningitidis 44/76-A

43.325

94.749

0.411
  pilC Vibrio cholerae strain A1552

40.887

96.897

0.396
  pilC Vibrio campbellii strain DS40M4

41.147

95.704

0.394
  pilC Thermus thermophilus HB27

38.06

95.943

0.365