Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   N8S79_RS09635 Genome accession   NZ_CP106678
Coordinates   2019000..2020223 (-) Length   407 a.a.
NCBI ID   WP_046850016.1    Uniprot ID   A0A0F7KFM2
Organism   Nitrosomonas sp. PLL12-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2014000..2025223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8S79_RS09605 - 2014511..2015398 (+) 888 WP_046850011.1 ATP-binding protein -
  N8S79_RS09610 - 2015417..2016367 (+) 951 WP_046850012.1 Nudix family hydrolase -
  N8S79_RS09615 - 2016410..2016610 (-) 201 WP_082110395.1 DNA gyrase inhibitor YacG -
  N8S79_RS09620 zapD 2016623..2017378 (-) 756 WP_046850013.1 cell division protein ZapD -
  N8S79_RS09625 coaE 2017483..2018103 (-) 621 WP_046850014.1 dephospho-CoA kinase -
  N8S79_RS09630 pilD 2018107..2018967 (-) 861 WP_046850015.1 prepilin peptidase Machinery gene
  N8S79_RS09635 pilC 2019000..2020223 (-) 1224 WP_046850016.1 type II secretion system F family protein Machinery gene
  N8S79_RS09640 - 2020515..2021423 (-) 909 WP_046850017.1 SDR family oxidoreductase -
  N8S79_RS09645 - 2021468..2022511 (+) 1044 WP_046850018.1 CDP-6-deoxy-delta-3,4-glucoseen reductase -
  N8S79_RS09650 - 2022514..2023692 (-) 1179 WP_046850019.1 heme biosynthesis protein HemY -
  N8S79_RS09655 - 2023689..2024465 (-) 777 WP_046850020.1 uroporphyrinogen-III C-methyltransferase -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44530.69 Da        Isoelectric Point: 9.8450

>NTDB_id=734070 N8S79_RS09635 WP_046850016.1 2019000..2020223(-) (pilC) [Nitrosomonas sp. PLL12-2]
MSAVIGRPDKKVKETSFSWEGKDRSGKVVKGEMRAAGAIVVTSTLRRQGIRVTKVTKTKIKGTIRDKDITLFTRQLATMM
KSGVPLLQAFDIVGKGHSNQAVGKLLMDIKMDIETGSSLANAFRKYPLYFDALFCNLVAAGEAAGILDDLLDRLATYKEK
IQAIKGKIKSALFYPISIIVVAFIITAVIMIFVIPAFKELFQNFGADLPAPTLMIMALSDFFVDYWWAIFGGIGLGLYAF
FYIWKRSTAMQRIMDRLVLRLPIFGEVIRKATVARWARTLSTMFAAGVPLVEAMDSVAGAAGNHIYFDATKKIQIEVSTG
SSLVDAMTQTNVFSNMVLQMVAIGEESGSLDSMLSKIADFFEAEVDNAVEALSSLMEPVIMVVLGTLIGGMVVAMYLPIF
KMGQVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=734070 N8S79_RS09635 WP_046850016.1 2019000..2020223(-) (pilC) [Nitrosomonas sp. PLL12-2]
ATGTCGGCTGTGATAGGGCGTCCGGATAAGAAAGTCAAAGAAACGAGCTTCTCATGGGAAGGTAAAGACAGATCTGGCAA
AGTAGTTAAAGGAGAAATGCGCGCAGCAGGTGCTATCGTTGTTACCTCTACTCTACGCCGCCAGGGTATCCGCGTCACAA
AAGTGACTAAAACCAAAATAAAGGGAACCATCAGGGATAAAGACATTACTTTGTTTACGCGCCAGCTTGCCACCATGATG
AAATCTGGCGTTCCTCTGTTACAAGCCTTCGATATCGTAGGCAAGGGGCATAGTAATCAGGCAGTCGGTAAATTATTGAT
GGATATAAAAATGGATATTGAAACAGGGAGTAGTCTGGCAAATGCTTTTCGAAAATATCCACTCTACTTTGATGCCTTGT
TTTGTAATCTTGTGGCAGCAGGAGAAGCAGCGGGTATCCTTGATGATTTGTTAGATCGCTTAGCGACTTATAAGGAAAAA
ATTCAGGCAATCAAAGGAAAAATTAAATCCGCGCTATTTTACCCCATATCCATTATAGTAGTTGCCTTTATCATTACAGC
AGTCATCATGATTTTTGTTATTCCTGCCTTCAAAGAATTATTCCAGAATTTTGGCGCGGATCTCCCAGCACCGACGTTAA
TGATTATGGCTCTTTCGGATTTCTTTGTCGATTATTGGTGGGCAATATTTGGCGGAATAGGGTTGGGGCTTTATGCTTTC
TTTTATATATGGAAACGTTCAACAGCTATGCAACGTATTATGGACCGGCTTGTATTGAGATTACCTATTTTTGGAGAGGT
GATCAGGAAAGCGACGGTGGCACGCTGGGCTCGCACGCTTTCCACCATGTTTGCTGCAGGCGTTCCACTCGTTGAAGCAA
TGGACTCAGTTGCAGGTGCTGCAGGGAACCACATTTATTTTGATGCGACTAAAAAAATTCAGATAGAAGTAAGTACAGGG
AGTAGCTTAGTAGATGCGATGACGCAGACTAACGTCTTTTCTAACATGGTTCTACAAATGGTAGCCATTGGAGAAGAATC
TGGTTCTCTGGATTCGATGTTAAGTAAAATCGCAGATTTTTTTGAAGCAGAGGTAGATAATGCGGTAGAAGCGCTCTCCA
GCCTGATGGAACCCGTGATCATGGTAGTCCTTGGCACCCTCATCGGGGGCATGGTTGTCGCCATGTACTTACCTATCTTC
AAAATGGGCCAAGTCGTTGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F7KFM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.904

97.543

0.526
  pilG Neisseria gonorrhoeae MS11

52.897

97.543

0.516
  pilG Neisseria meningitidis 44/76-A

52.645

97.543

0.514
  pilC Pseudomonas stutzeri DSM 10701

51.99

98.771

0.514
  pilC Acinetobacter baumannii D1279779

50.251

97.789

0.491
  pilC Acinetobacter baylyi ADP1

49.622

97.543

0.484
  pilC Vibrio campbellii strain DS40M4

39.552

98.771

0.391
  pilC Vibrio cholerae strain A1552

38.945

97.789

0.381