Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   N7988_RS18950 Genome accession   NZ_CP106675
Coordinates   3723528..3724766 (-) Length   412 a.a.
NCBI ID   WP_000990688.1    Uniprot ID   A0A9W5QDY8
Organism   Bacillus cereus strain SRCM116293     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3718528..3729766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7988_RS18930 (N7988_18930) rny 3719317..3720882 (-) 1566 WP_000099770.1 ribonuclease Y -
  N7988_RS18935 (N7988_18935) - 3721364..3721786 (-) 423 Protein_3675 DNA recombination/repair protein RecA -
  N7988_RS18940 (N7988_18940) - 3722055..3722678 (-) 624 WP_065703376.1 topoisomerase I -
  N7988_RS18945 (N7988_18945) recA 3722776..3723384 (-) 609 Protein_3677 recombinase RecA -
  N7988_RS18950 (N7988_18950) cinA 3723528..3724766 (-) 1239 WP_000990688.1 competence/damage-inducible protein CinA Machinery gene
  N7988_RS18955 (N7988_18955) pgsA 3724787..3725365 (-) 579 WP_065703374.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  N7988_RS18960 (N7988_18960) - 3725430..3726341 (-) 912 WP_000137476.1 RodZ domain-containing protein -
  N7988_RS18965 (N7988_18965) - 3726363..3727148 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  N7988_RS18970 (N7988_18970) - 3727287..3727535 (-) 249 WP_000114450.1 DUF3243 domain-containing protein -
  N7988_RS18975 (N7988_18975) - 3727611..3728324 (-) 714 WP_000759606.1 SDR family oxidoreductase -
  N7988_RS18980 (N7988_18980) - 3728425..3729711 (-) 1287 WP_065703370.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45479.80 Da        Isoelectric Point: 5.3499

>NTDB_id=734035 N7988_RS18950 WP_000990688.1 3723528..3724766(-) (cinA) [Bacillus cereus strain SRCM116293]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIEAAEERADILIFTGGLGPTKDDLTKET
IAASLDEELVYDEKALALISNYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGVNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVSEAEKLIQHVED
LILERVGEFFYGYDQEFLHYKAIELLKRKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYHNDVKQHVLRVPEEV
LHTDGAVSKECARYLAENVKDVLKADIGISFTGVAGPDASEQKEPGTVFVGLSIKDEPTVVFPLNLSGSRQQIRERTAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=734035 N7988_RS18950 WP_000990688.1 3723528..3724766(-) (cinA) [Bacillus cereus strain SRCM116293]
ATGAATGCTGAGATTATTGCGGTTGGAACTGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAACGTGTACTATCATACTGTTGTTGGTGATAATAATAAGCGATTGCAAAAGGCGATTG
AAGCTGCGGAAGAACGTGCTGATATACTTATTTTTACAGGTGGATTAGGACCAACAAAAGATGATTTAACGAAAGAAACG
ATAGCTGCTAGTTTAGATGAAGAGCTTGTGTATGATGAAAAGGCATTAGCCTTAATAAGTAATTACTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAAGCGCTCGTTTTAAATGGAGCAACAGTATTTGCAAATGACCACGGTATGG
CGCCTGGTATGGGGGTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGGCCGCCAAAAGAAATGAAACCAATGTAT
GTAAGTTACGTAGAGCCTTTTTTACGTAATTTTACAACAGGAGAAAACATTTATTCTCGTGTGCTTCGTTTCTTCGGTAT
TGGGGAGTCCCAATTAGAGGTGAAAGTGCAAGATTTAATTGATGGACAAACAAACCCAACAATCGCCCCGTTAGCAAATG
ATGGAGAAGTGACATTACGTTTAACCGCTAAGCATCAAAATGTTAGCGAAGCGGAGAAACTAATTCAACATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGAATTTTTGCATTATAAGGCAATCGAGTTATTGAA
GAGAAAAGGGTTAACTTTAGCGTGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACTGAAAACGCTGGTG
TTTCTTCTGTGTTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACGTGTGCCTGAAGAAGTG
TTGCATACTGATGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAGGATGTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGGCCAGATGCTTCAGAACAGAAAGAACCAGGAACAGTATTTGTTGGGCTTTCGA
TTAAGGATGAACCAACTGTAGTCTTTCCTCTTAATTTAAGCGGAAGTCGTCAACAAATTAGAGAACGAACAGCAAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Competence-damaged protein (CinA)

(258-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.252

100

0.583
  cinA Streptococcus pneumoniae TIGR4

46.778

100

0.476
  cinA Streptococcus mitis SK321

46.539

100

0.473
  cinA Streptococcus pneumoniae Rx1

46.301

100

0.471
  cinA Streptococcus pneumoniae R6

46.301

100

0.471
  cinA Streptococcus pneumoniae D39

46.062

100

0.468
  cinA Streptococcus mitis NCTC 12261

46.062

100

0.468
  cinA Streptococcus mutans UA159

45.98

96.602

0.444
  cinA Streptococcus suis isolate S10

40.318

91.505

0.369