Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   N7V09_RS00245 Genome accession   NZ_CP104900
Coordinates   62643..63908 (+) Length   421 a.a.
NCBI ID   WP_248968874.1    Uniprot ID   -
Organism   Shewanella seohaensis strain KCTC 23556     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 57643..68908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7V09_RS21345 - 58805..59173 (+) 369 WP_283105345.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  N7V09_RS00235 (N7V09_00235) - 59230..60588 (-) 1359 WP_248968872.1 O-antigen ligase -
  N7V09_RS00240 (N7V09_00240) pilB 60782..62491 (+) 1710 WP_248968873.1 type IV-A pilus assembly ATPase PilB Machinery gene
  N7V09_RS00245 (N7V09_00245) pilC 62643..63908 (+) 1266 WP_248968874.1 type II secretion system F family protein Machinery gene
  N7V09_RS00250 (N7V09_00250) pilD 63964..64890 (+) 927 WP_248968875.1 A24 family peptidase Machinery gene
  N7V09_RS00255 (N7V09_00255) coaE 64986..65603 (+) 618 WP_248968876.1 dephospho-CoA kinase -
  N7V09_RS00260 (N7V09_00260) zapD 65596..66330 (+) 735 WP_248968877.1 cell division protein ZapD -
  N7V09_RS00265 (N7V09_00265) yacG 66438..66647 (+) 210 WP_011621218.1 DNA gyrase inhibitor YacG -
  N7V09_RS00270 (N7V09_00270) mutT 66682..67074 (+) 393 WP_248968878.1 8-oxo-dGTP diphosphatase MutT -
  N7V09_RS00275 (N7V09_00275) - 67216..67752 (+) 537 WP_248968879.1 thioredoxin family protein -
  N7V09_RS00280 (N7V09_00280) - 67826..68752 (-) 927 WP_248968880.1 exopolyphosphatase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46302.63 Da        Isoelectric Point: 10.1516

>NTDB_id=733230 N7V09_RS00245 WP_248968874.1 62643..63908(+) (pilC) [Shewanella seohaensis strain KCTC 23556]
MATATTVKKPRAKKNEQKSQLKTYTFEWKGLNRDGKKTGGELKGTSVAEVKSQLKLQGVNPKVVRKKASPFFARNPDIKP
MDIAMVTRQIATMLAAGVPLVTTIEMLGRGHEKQKMRELLSTILSEVQSGIPLSDSLRPHRRYFDDLYVDLVAAGEHSGS
LDAVFDRIATYREKAEALKSKIKKAMFYPAAVVVVAIAVTTLLLLFVVPQFEDIFKGFGAELPAFTQMIVGISRFLQSSW
YIFFAAIAISIWLFVRAHRNSQMFRDRIDELVLKIPVIGEILHKAAMARFSRTLATTFAAGVPLIDGMESAAGASGNAVY
RAALLKVRQEVMAGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDSMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGI
LVGGLIVGMYLPIFQMGNIVG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=733230 N7V09_RS00245 WP_248968874.1 62643..63908(+) (pilC) [Shewanella seohaensis strain KCTC 23556]
ATGGCTACGGCAACAACGGTAAAAAAGCCTCGCGCCAAAAAGAACGAGCAAAAGAGCCAACTAAAGACATACACCTTTGA
GTGGAAAGGTTTGAACCGTGATGGCAAAAAAACCGGTGGCGAATTAAAAGGCACCAGTGTCGCCGAGGTGAAAAGCCAGC
TTAAGCTTCAAGGGGTTAACCCTAAAGTTGTCCGCAAAAAGGCATCGCCTTTTTTCGCTCGAAATCCAGATATCAAGCCT
ATGGATATCGCCATGGTGACACGCCAAATAGCGACTATGCTGGCAGCTGGTGTTCCCTTAGTTACCACCATAGAAATGCT
CGGCCGTGGCCATGAAAAACAAAAAATGCGCGAGCTACTCAGTACTATATTATCAGAGGTACAATCGGGTATTCCATTGT
CAGACTCACTACGCCCCCATAGACGCTATTTTGATGATCTCTATGTCGACTTAGTTGCAGCGGGTGAGCATTCAGGCTCT
CTTGATGCTGTGTTCGATCGAATTGCAACCTACAGAGAAAAAGCTGAAGCCTTAAAGTCCAAAATTAAAAAGGCGATGTT
TTACCCTGCCGCAGTCGTTGTAGTAGCGATAGCAGTAACAACACTGCTTTTGTTGTTTGTAGTACCGCAATTTGAAGATA
TTTTTAAGGGCTTTGGTGCTGAGCTTCCTGCTTTCACCCAGATGATCGTTGGCATTTCACGTTTTTTACAGAGTTCTTGG
TATATATTCTTCGCTGCCATAGCTATCAGTATCTGGTTATTTGTCCGCGCCCACCGAAATTCACAAATGTTTAGGGATCG
AATAGATGAACTTGTGCTTAAAATTCCCGTTATCGGCGAGATATTGCATAAAGCAGCTATGGCACGATTTTCCCGTACCT
TAGCCACCACCTTTGCGGCAGGAGTGCCTTTAATTGACGGCATGGAGTCAGCTGCTGGAGCCTCTGGTAATGCGGTTTAT
CGAGCCGCGTTATTAAAAGTACGCCAAGAAGTCATGGCAGGGATGCAGATGAACGTCGCCATGCGCACCACAGGGCTTTT
CCCCGATATGTTAATCCAAATGGTAATGATTGGTGAAGAGTCTGGCTCACTCGATAGTATGCTAAACAAAGTGGCCAATA
TTTATGAAATGCAGGTTGATGATGCCGTTGATGGCTTATCAAGCCTTATCGAGCCAATTATGATGGTAGTGATTGGTATC
TTGGTCGGCGGTTTGATTGTCGGTATGTATCTGCCGATTTTCCAAATGGGTAATATCGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(87-209)

Type II secretion system (T2SS), protein F (T2SSF)

(290-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.5

95.012

0.527
  pilC Acinetobacter baylyi ADP1

51.134

94.299

0.482
  pilC Acinetobacter baumannii D1279779

50.503

94.537

0.477
  pilC Legionella pneumophila strain ERS1305867

50.378

94.299

0.475
  pilC Vibrio cholerae strain A1552

46.098

97.387

0.449
  pilC Vibrio campbellii strain DS40M4

44.307

95.962

0.425
  pilG Neisseria meningitidis 44/76-A

41

95.012

0.39
  pilG Neisseria gonorrhoeae MS11

41

95.012

0.39