Detailed information NTG0733231

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: N7V09_RS00250
• Genome accession: NZ_CP104900
• Coordinates: 63964..64890 (+)
• Length: 308 a.a.
• NCBI ID: WP_248968875.1
• Uniprot ID: -
• Organism: Shewanella seohaensis strain KCTC 23556
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 58964..69890

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N7V09_RS00235 (N7V09_00235)	-	59230..60588 (-)	1359	WP_248968872.1	O-antigen ligase	-
N7V09_RS00240 (N7V09_00240)	pilB	60782..62491 (+)	1710	WP_248968873.1	type IV-A pilus assembly ATPase PilB	Machinery gene
N7V09_RS00245 (N7V09_00245)	pilC	62643..63908 (+)	1266	WP_248968874.1	type II secretion system F family protein	Machinery gene
N7V09_RS00250 (N7V09_00250)	pilD	63964..64890 (+)	927	WP_248968875.1	A24 family peptidase	Machinery gene
N7V09_RS00255 (N7V09_00255)	coaE	64986..65603 (+)	618	WP_248968876.1	dephospho-CoA kinase	-
N7V09_RS00260 (N7V09_00260)	zapD	65596..66330 (+)	735	WP_248968877.1	cell division protein ZapD	-
N7V09_RS00265 (N7V09_00265)	yacG	66438..66647 (+)	210	WP_011621218.1	DNA gyrase inhibitor YacG	-
N7V09_RS00270 (N7V09_00270)	mutT	66682..67074 (+)	393	WP_248968878.1	8-oxo-dGTP diphosphatase MutT	-
N7V09_RS00275 (N7V09_00275)	-	67216..67752 (+)	537	WP_248968879.1	thioredoxin family protein	-
N7V09_RS00280 (N7V09_00280)	-	67826..68752 (-)	927	WP_248968880.1	exopolyphosphatase	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34250.68 Da
• Isoelectric Point: 7.3447

>NTDB_id=733231 N7V09_RS00250 WP_248968875.1 63964..64890(+) (pilD) [Shewanella seohaensis strain KCTC 23556]
MSDFTSLLSHSLAQSPWLFIALSFVFAATIGSFLNVVIHRFPVMMKREWQQECNQYLQEYHADVVKQIGIEKLNKPIDTY
PEKYNLVVPGSACPKCKTAIKPWHNLPIVGWLMLRGKCAACDAAISSRYPIIELVTGLLVATIAWHFGPSWQFVFAAILT
FVLIALTGIDLDEMLLPDQMTLPLLWLGLLINLNHTFTTPTDAVIGAAAGYLSLWSVFWLFKLLTGKEGMGYGDFKLLAV
FGAWLGWQMLPLVILLSSLVGALVGITLIVLKRNQLANPIPFGPYIAAAGWIALIWGQPIVDWYLSTL

Nucleotide

• Length: 927 bp

>NTDB_id=733231 N7V09_RS00250 WP_248968875.1 63964..64890(+) (pilD) [Shewanella seohaensis strain KCTC 23556]
ATGTCAGACTTTACATCCCTTTTAAGCCACTCTCTCGCTCAGAGTCCTTGGCTATTTATTGCGTTAAGCTTTGTGTTTGC
CGCCACTATTGGTAGCTTTTTAAATGTCGTCATTCACCGCTTTCCGGTAATGATGAAGCGCGAATGGCAACAGGAGTGCA
ATCAATATCTACAGGAATATCATGCTGATGTTGTAAAGCAGATTGGCATCGAAAAGCTCAATAAACCGATAGATACTTAC
CCTGAAAAATACAATCTAGTGGTGCCAGGTTCCGCCTGCCCTAAATGTAAAACCGCAATCAAGCCTTGGCATAATTTGCC
GATTGTGGGTTGGCTTATGCTCAGAGGAAAATGCGCCGCCTGCGATGCGGCAATCTCCTCACGCTATCCGATTATTGAGT
TAGTAACAGGATTATTAGTTGCAACAATAGCTTGGCATTTTGGTCCTAGCTGGCAGTTTGTGTTTGCTGCGATATTAACC
TTCGTATTGATTGCCTTAACGGGTATTGATCTCGATGAGATGCTGCTTCCCGACCAGATGACCCTTCCACTCCTATGGCT
AGGATTGCTCATTAACCTCAACCATACCTTTACCACTCCAACCGATGCCGTTATAGGTGCTGCAGCGGGCTATTTAAGTC
TCTGGTCGGTGTTTTGGCTGTTTAAGCTACTCACAGGTAAGGAAGGCATGGGTTATGGCGACTTTAAACTGCTCGCCGTA
TTTGGCGCATGGCTAGGTTGGCAAATGCTCCCCCTAGTCATTTTACTGTCTTCTTTAGTTGGCGCCCTTGTCGGCATCAC
GCTCATCGTGCTCAAACGTAATCAGCTAGCAAACCCAATCCCCTTTGGGCCTTATATTGCCGCCGCTGGTTGGATAGCGC
TAATCTGGGGACAACCTATAGTCGATTGGTATCTAAGTACGTTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (158-266)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (25-147)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.542	95.779	0.503
pilD	Vibrio campbellii strain DS40M4	51.02	95.455	0.487
pilD	Acinetobacter nosocomialis M2	48.366	99.351	0.481
pilD	Acinetobacter baumannii D1279779	48.039	99.351	0.477
pilD	Neisseria gonorrhoeae MS11	46.392	94.481	0.438