Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   GZI12_RS13920 Genome accession   NZ_AP019651
Coordinates   2931961..2933076 (-) Length   371 a.a.
NCBI ID   WP_162047467.1    Uniprot ID   -
Organism   Vibrio taketomensis strain C4III291     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2926961..2938076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZI12_RS13890 hemF 2927513..2928433 (-) 921 WP_162047461.1 oxygen-dependent coproporphyrinogen oxidase -
  GZI12_RS13895 - 2928448..2929005 (-) 558 WP_162047462.1 L-threonylcarbamoyladenylate synthase -
  GZI12_RS13900 purE 2929202..2929687 (+) 486 WP_162047463.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  GZI12_RS13905 - 2929691..2930824 (+) 1134 WP_162047464.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  GZI12_RS13910 - 2930885..2931466 (-) 582 WP_162047465.1 type I DNA topoisomerase -
  GZI12_RS13915 - 2931482..2931958 (-) 477 WP_162047466.1 DUF494 family protein -
  GZI12_RS13920 dprA 2931961..2933076 (-) 1116 WP_162047467.1 DNA-processing protein DprA Machinery gene
  GZI12_RS13925 - 2933069..2934127 (-) 1059 WP_232060929.1 LysM peptidoglycan-binding domain-containing protein -
  GZI12_RS13930 def 2934299..2934811 (+) 513 WP_162047468.1 peptide deformylase -
  GZI12_RS13935 fmt 2934847..2935794 (+) 948 WP_162047469.1 methionyl-tRNA formyltransferase -
  GZI12_RS13940 rsmB 2935884..2937164 (+) 1281 WP_162047470.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40102.95 Da        Isoelectric Point: 7.2488

>NTDB_id=73065 GZI12_RS13920 WP_162047467.1 2931961..2933076(-) (dprA) [Vibrio taketomensis strain C4III291]
MSNAALVAWLTLYSVPRLGIKGLQKLLAKASPEQIVAWETMQLQASGLTAAQVKAITHPNQRYLESCLQWQAQSPNHHIL
TLDDSRYPFRLKQIPDPPPLLFVQGDPSKLSLPQVAMVGSRHASIDGLNSAQYFAAAIAEQGVVVTSGLALGVDGHAHDG
ALKAGGDTFAVLGSGLNTIYPARHRQLATRIEQQGALISEFPPDILPKAANFPRRNRIISGLSLAVLVVEATEKSGSLIT
ARFAAEHGRDVFALPGSIHTPQARGCNQLIKQGACLVQTPQDIFDEIDSLIRWSDSYIASEQNQNLLTKETKEQLPFAEL
LANLGTKVTPVDILAQRTNIPVQEVMMQLLELELSGHVVAVSGGYIRNGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=73065 GZI12_RS13920 WP_162047467.1 2931961..2933076(-) (dprA) [Vibrio taketomensis strain C4III291]
ATGAGTAATGCAGCATTAGTCGCTTGGCTAACCTTATATTCCGTTCCTCGTCTAGGAATTAAGGGCTTACAAAAGTTATT
GGCAAAAGCGTCTCCTGAGCAAATCGTTGCTTGGGAGACGATGCAGTTGCAGGCATCCGGCCTGACAGCTGCACAAGTGA
AGGCGATAACCCATCCGAACCAACGTTATTTAGAGAGTTGCCTACAATGGCAAGCTCAATCCCCTAACCATCATATTTTG
ACGCTGGACGATTCGAGATACCCATTTCGTTTAAAACAGATTCCTGATCCGCCACCGTTACTTTTTGTACAAGGAGATCC
GAGCAAGTTAAGCCTGCCGCAAGTCGCAATGGTGGGTAGTCGCCATGCATCAATTGATGGGCTAAATAGCGCTCAATATT
TTGCCGCTGCGATTGCAGAGCAAGGGGTGGTGGTGACTAGCGGTTTGGCGCTGGGTGTTGATGGACACGCTCATGATGGT
GCGCTTAAGGCAGGCGGCGATACTTTCGCTGTTTTAGGCTCCGGTCTTAATACGATTTATCCCGCTCGACATCGACAACT
TGCCACGCGCATTGAGCAGCAAGGTGCACTTATTTCTGAGTTTCCGCCTGATATCCTTCCGAAAGCCGCCAATTTTCCAC
GCCGTAATCGTATTATTAGCGGCCTCTCTTTAGCTGTATTAGTCGTGGAGGCGACCGAAAAAAGTGGATCGTTGATTACC
GCCCGTTTTGCAGCGGAACACGGGCGAGATGTCTTTGCATTACCTGGTTCGATTCATACGCCCCAAGCCAGAGGTTGTAA
TCAGTTGATCAAGCAAGGCGCCTGTTTGGTACAAACCCCGCAGGATATATTTGATGAAATAGATAGCCTGATTCGCTGGT
CTGATTCGTATATAGCTTCAGAGCAAAATCAAAATTTGCTGACAAAAGAAACGAAAGAACAATTGCCATTTGCCGAGCTT
CTAGCTAATTTAGGCACAAAAGTGACACCTGTTGATATTCTTGCTCAAAGGACCAATATTCCTGTGCAAGAAGTCATGAT
GCAGCTTTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCCGGTGGCTATATTCGTAATGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(318-364)

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

61.58

98.922

0.609
  dprA Vibrio cholerae strain A1552

54.717

100

0.547
  dprA Glaesserella parasuis strain SC1401

43.127

100

0.431
  dprA Legionella pneumophila strain ERS1305867

43.056

97.035

0.418
  dprA Neisseria meningitidis MC58

36.896

100

0.391
  dprA Neisseria meningitidis strain C311

36.896

100

0.391
  dprA Acinetobacter baumannii D1279779

42.433

90.836

0.385
  dprA Acinetobacter baumannii strain A118

42.012

91.105

0.383
  dprA Acinetobacter baylyi ADP1

38.482

99.461

0.383

Multiple sequence alignment