Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   Vt282_RS01055 Genome accession   NZ_AP019649
Coordinates   225352..227130 (+) Length   592 a.a.
NCBI ID   WP_162062345.1    Uniprot ID   -
Organism   Vibrio taketomensis strain C4III282     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 220352..232130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vt282_RS01035 pilM 222686..223678 (+) 993 WP_162062343.1 type IV pilus assembly protein PilM -
  Vt282_RS01040 - 223668..224245 (+) 578 Protein_213 PilN domain-containing protein -
  Vt282_RS01045 pilO 224238..224828 (+) 591 WP_162047334.1 type 4a pilus biogenesis protein PilO Machinery gene
  Vt282_RS01050 pilP 224818..225333 (+) 516 WP_162062344.1 pilus assembly protein PilP Machinery gene
  Vt282_RS01055 pilQ 225352..227130 (+) 1779 WP_162062345.1 type IV pilus secretin PilQ family protein Machinery gene
  Vt282_RS01060 aroK 227294..227812 (+) 519 WP_162047331.1 shikimate kinase AroK -
  Vt282_RS01065 aroB 227843..228931 (+) 1089 WP_162062346.1 3-dehydroquinate synthase -
  Vt282_RS01070 - 228961..230421 (+) 1461 WP_162062347.1 SPOR domain-containing protein -
  Vt282_RS01075 - 230555..231373 (+) 819 WP_162062348.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 64752.39 Da        Isoelectric Point: 4.5259

>NTDB_id=72997 Vt282_RS01055 WP_162062345.1 225352..227130(+) (pilQ) [Vibrio taketomensis strain C4III282]
MRNGLNLTVQWIVKVGMLLSYMLFATQCLAQEAGNAFTSVDFRVDNEKNGKIVLELRDTQIMVDLKKTSQGLTIDLLNTT
IEEDQLKLFDVRDFATNVQTLELFREPNSVRMVAQIDGKFDYQYSLNRNFVEIVVSKPQIQAKEKEQTILDKPAKKMSIN
FQDIPVRNVLQLIADYNNFNLVVSDSVSGNLTLRLDGVPWTQVLDIILQVKGLDKRVDGNVVLVAPRAELEQREKQRLEN
ARLEDELGDLTSEIIKVNFANAAEIAEMIGGEQAISMLSDRGSITVDDRTNSLLIRDLKSNIDVVRSIIESLDIPVKQVQ
IEARIVTVNEGNLDDLGVRWSINSSDKVGATLEGNFAERGLYQSSNNSSNSGSNSGSTGSGSTSGSGSAAEGGDEIDDFL
NVNLGAGGNAASIAFQVAKLGSNTLLDLELSALQRESKAEVISSPRLITTNKKPAYIEQGTEIPYLESSSSGATSVTFKK
AVLSLKVTPQITPDNRLVLDLSVTQDRPGEVVKVGTGEAVSINTQRIGTQVLVENGETVVLGGIYQYSISDTVEKVPLLG
DIPFLGNLFRHTYQNMGKSELLIFVTPKVVMQ

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=72997 Vt282_RS01055 WP_162062345.1 225352..227130(+) (pilQ) [Vibrio taketomensis strain C4III282]
ATGAGAAATGGATTGAATTTAACCGTGCAGTGGATAGTCAAGGTTGGCATGTTGCTTAGCTACATGCTCTTTGCTACTCA
ATGTCTCGCTCAAGAGGCAGGTAATGCATTTACTAGTGTCGATTTTCGTGTAGATAACGAGAAAAATGGCAAGATTGTGC
TTGAATTGCGCGATACGCAAATCATGGTTGACCTGAAGAAAACCTCGCAAGGTCTGACAATTGATTTGCTGAATACCACC
ATCGAAGAAGATCAACTTAAGTTATTTGATGTGCGTGATTTTGCGACCAACGTGCAAACCTTGGAGCTATTTCGCGAGCC
AAACAGCGTGAGAATGGTGGCACAAATTGATGGTAAGTTTGATTACCAATACTCGCTGAACCGTAACTTTGTTGAAATTG
TGGTGAGTAAGCCACAAATTCAAGCCAAAGAAAAAGAGCAAACCATTTTAGATAAGCCAGCGAAAAAGATGTCGATCAAC
TTCCAAGACATCCCAGTACGTAACGTATTGCAGCTTATTGCGGACTATAACAATTTCAACCTAGTAGTGTCTGACTCAGT
CTCAGGTAACCTGACTTTACGTCTCGATGGTGTGCCTTGGACTCAAGTACTCGACATCATTTTGCAAGTAAAAGGCCTCG
ATAAGCGTGTTGACGGTAACGTGGTATTGGTTGCTCCGCGTGCAGAACTTGAGCAACGTGAAAAACAACGTTTGGAAAAT
GCTCGCTTAGAAGATGAATTGGGTGATCTGACATCAGAAATTATTAAAGTGAATTTTGCTAATGCAGCTGAAATTGCAGA
GATGATTGGTGGTGAACAGGCGATTAGTATGTTGTCTGACCGTGGTTCTATTACCGTAGATGACCGCACCAACTCACTGT
TGATTCGCGATCTCAAGAGTAACATTGACGTCGTGCGCAGCATTATTGAATCGCTCGATATACCAGTGAAACAGGTACAA
ATCGAAGCCCGTATCGTGACAGTCAACGAAGGTAACCTCGATGATCTTGGTGTTCGTTGGAGTATTAACTCCAGTGACAA
AGTGGGTGCGACATTAGAGGGGAATTTTGCTGAGCGCGGTTTGTATCAAAGCTCTAATAACAGCTCTAACTCTGGTTCTA
ACTCAGGAAGCACGGGCTCAGGTAGCACATCAGGTTCAGGATCTGCGGCGGAAGGCGGTGACGAAATTGATGATTTCCTC
AATGTTAACTTAGGAGCGGGTGGTAACGCGGCGTCGATTGCGTTCCAAGTGGCTAAGTTGGGTTCCAATACACTGCTTGA
TCTTGAGCTTTCGGCATTGCAACGTGAGTCAAAGGCAGAAGTTATTTCTAGCCCAAGATTGATCACGACTAACAAAAAAC
CAGCATACATTGAGCAAGGTACGGAAATCCCTTATTTAGAATCGTCATCCAGCGGTGCAACCTCTGTGACGTTTAAGAAA
GCGGTATTGAGTCTTAAAGTGACACCACAAATCACGCCTGACAACCGTTTGGTGCTGGATTTGAGTGTGACTCAAGATAG
ACCAGGTGAAGTGGTGAAAGTCGGCACTGGCGAAGCGGTATCGATTAATACGCAACGCATTGGTACTCAAGTCTTGGTGG
AAAACGGTGAAACCGTCGTATTGGGTGGTATTTACCAATACAGTATCAGTGATACTGTAGAGAAAGTGCCACTACTTGGA
GACATCCCGTTTCTTGGCAATTTGTTCCGTCATACCTACCAAAATATGGGTAAAAGTGAACTGTTAATCTTTGTCACGCC
GAAAGTAGTTATGCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(253-318)

Bacterial type II and III secretion system protein (Secretin)

(432-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

66.332

100

0.669
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

62.895

100

0.639
  pilQ Vibrio cholerae strain A1552

62.895

100

0.639
  pilQ Legionella pneumophila strain ERS1305867

40.989

95.608

0.392
  pilQ Legionella pneumophila strain Lp02

40.989

95.608

0.392
  pilQ Pseudomonas aeruginosa PAK

39.506

95.777

0.378
  comQ Acinetobacter baylyi ADP1

36.717

99.831

0.367

Multiple sequence alignment