Detailed information
Bioinformatically predicted
Overview
| Name | pilP | Type | Machinery gene |
| Locus tag | Vt282_RS01050 | Genome accession | NZ_AP019649 |
| Coordinates | 224818..225333 (+) | Length | 171 a.a. |
| NCBI ID | WP_162062344.1 | Uniprot ID | - |
| Organism | Vibrio taketomensis strain C4III282 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 219818..230333
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Vt282_RS01030 | - | 219998..222547 (-) | 2550 | WP_162062342.1 | penicillin-binding protein 1A | - |
| Vt282_RS01035 | pilM | 222686..223678 (+) | 993 | WP_162062343.1 | type IV pilus assembly protein PilM | - |
| Vt282_RS01040 | - | 223668..224245 (+) | 578 | Protein_213 | PilN domain-containing protein | - |
| Vt282_RS01045 | pilO | 224238..224828 (+) | 591 | WP_162047334.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| Vt282_RS01050 | pilP | 224818..225333 (+) | 516 | WP_162062344.1 | pilus assembly protein PilP | Machinery gene |
| Vt282_RS01055 | pilQ | 225352..227130 (+) | 1779 | WP_162062345.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| Vt282_RS01060 | aroK | 227294..227812 (+) | 519 | WP_162047331.1 | shikimate kinase AroK | - |
| Vt282_RS01065 | aroB | 227843..228931 (+) | 1089 | WP_162062346.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19011.00 Da Isoelectric Point: 9.7297
>NTDB_id=72996 Vt282_RS01050 WP_162062344.1 224818..225333(+) (pilP) [Vibrio taketomensis strain C4III282]
MKAKWLCPSLLVILLVGCRANHDSLDEYIVQTKKTAQHEVKALTPVLEFVTSDYDAHANRSPFVLPQAALVLNQPQLRAD
CWQPKRRQKNGALERFPLEKLSLKGVMSRNGSNSALVQTPSGDLVKINAGQYIGLNNGKVVKVTESYMQIDETLPDGLGC
WSRRNVKLALN
MKAKWLCPSLLVILLVGCRANHDSLDEYIVQTKKTAQHEVKALTPVLEFVTSDYDAHANRSPFVLPQAALVLNQPQLRAD
CWQPKRRQKNGALERFPLEKLSLKGVMSRNGSNSALVQTPSGDLVKINAGQYIGLNNGKVVKVTESYMQIDETLPDGLGC
WSRRNVKLALN
Nucleotide
Download Length: 516 bp
>NTDB_id=72996 Vt282_RS01050 WP_162062344.1 224818..225333(+) (pilP) [Vibrio taketomensis strain C4III282]
ATGAAGGCTAAATGGTTGTGCCCAAGTTTACTCGTGATTTTGCTGGTTGGTTGTCGAGCCAACCATGACTCTCTTGATGA
GTATATCGTGCAAACAAAGAAAACTGCTCAACATGAAGTAAAGGCATTAACGCCGGTTCTCGAGTTTGTCACGTCGGATT
ATGACGCTCATGCCAATAGGTCACCGTTTGTTTTACCTCAAGCGGCATTGGTGCTCAATCAACCTCAATTAAGGGCTGAT
TGCTGGCAACCAAAACGTCGTCAGAAAAATGGTGCATTGGAGCGTTTCCCACTAGAAAAATTAAGTCTTAAAGGCGTAAT
GAGCCGCAACGGCAGTAACTCGGCGTTAGTCCAAACGCCAAGCGGAGACTTGGTGAAAATCAACGCTGGACAATACATTG
GTTTAAATAATGGCAAGGTTGTCAAAGTCACCGAGTCTTACATGCAAATCGATGAAACATTGCCGGATGGTTTGGGTTGC
TGGAGCCGTCGCAACGTCAAATTAGCCCTGAATTAA
ATGAAGGCTAAATGGTTGTGCCCAAGTTTACTCGTGATTTTGCTGGTTGGTTGTCGAGCCAACCATGACTCTCTTGATGA
GTATATCGTGCAAACAAAGAAAACTGCTCAACATGAAGTAAAGGCATTAACGCCGGTTCTCGAGTTTGTCACGTCGGATT
ATGACGCTCATGCCAATAGGTCACCGTTTGTTTTACCTCAAGCGGCATTGGTGCTCAATCAACCTCAATTAAGGGCTGAT
TGCTGGCAACCAAAACGTCGTCAGAAAAATGGTGCATTGGAGCGTTTCCCACTAGAAAAATTAAGTCTTAAAGGCGTAAT
GAGCCGCAACGGCAGTAACTCGGCGTTAGTCCAAACGCCAAGCGGAGACTTGGTGAAAATCAACGCTGGACAATACATTG
GTTTAAATAATGGCAAGGTTGTCAAAGTCACCGAGTCTTACATGCAAATCGATGAAACATTGCCGGATGGTTTGGGTTGC
TGGAGCCGTCGCAACGTCAAATTAGCCCTGAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilP | Vibrio cholerae strain A1552 |
61.446 |
97.076 |
0.596 |
| pilP | Vibrio campbellii strain DS40M4 |
49.412 |
99.415 |
0.491 |