Detailed information NTG0729453

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: N4Q31_RS16470
• Genome accession: NZ_CP104391
• Coordinates: 3184197..3184853 (-)
• Length: 218 a.a.
• NCBI ID: WP_231730869.1
• Uniprot ID: -
• Organism: Bacillus safensis strain GX-H6
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3179197..3189853

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N4Q31_RS16435 (N4Q31_16435)	fliW	3179335..3179769 (-)	435	WP_041088051.1	flagellar assembly protein FliW	-
N4Q31_RS16440 (N4Q31_16440)	-	3179798..3180376 (-)	579	WP_041088049.1	DUF6470 family protein	-
N4Q31_RS16445 (N4Q31_16445)	flgL	3180423..3181331 (-)	909	WP_058837540.1	flagellar hook-associated protein FlgL	-
N4Q31_RS16450 (N4Q31_16450)	flgK	3181341..3182861 (-)	1521	WP_058837539.1	flagellar hook-associated protein FlgK	-
N4Q31_RS16455 (N4Q31_16455)	-	3182877..3183359 (-)	483	WP_059376486.1	flagellar protein FlgN	-
N4Q31_RS16460 (N4Q31_16460)	flgM	3183378..3183641 (-)	264	WP_024423620.1	flagellar biosynthesis anti-sigma factor FlgM	-
N4Q31_RS16465 (N4Q31_16465)	-	3183721..3184140 (-)	420	WP_039181808.1	TIGR03826 family flagellar region protein	-
N4Q31_RS16470 (N4Q31_16470)	comFC	3184197..3184853 (-)	657	WP_231730869.1	ComF family protein	Machinery gene
N4Q31_RS16475 (N4Q31_16475)	-	3184880..3185173 (-)	294	WP_059376485.1	late competence development ComFB family protein	-
N4Q31_RS16480 (N4Q31_16480)	comFA	3185223..3186620 (-)	1398	WP_391509951.1	DEAD/DEAH box helicase	Machinery gene
N4Q31_RS16485 (N4Q31_16485)	-	3186741..3187583 (-)	843	WP_039181815.1	DegV family protein	-
N4Q31_RS16490 (N4Q31_16490)	degU	3187800..3188489 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
N4Q31_RS16495 (N4Q31_16495)	degS	3188554..3189729 (-)	1176	WP_260774922.1	sensor histidine kinase	Regulator

Sequence

Protein

• Length: 218 a.a.
• Molecular weight: 24965.05 Da
• Isoelectric Point: 9.9389

>NTDB_id=729453 N4Q31_RS16470 WP_231730869.1 3184197..3184853(-) (comFC) [Bacillus safensis strain GX-H6]
MPAFTWKSFLLLNDDRLCVACKNDLVKIERPICPTCGRAQSNDQMCQDCDRWNERPDSTKVLVKNRSVYTYNELMKDVLA
RFKFRGDTALVELFKRDVQAAFKHSFSIKEPLLIPIPLSHERLKERGFNQSVIIASLIGKPILQPLVKIHQSKQSKKKKN
ERLDQKGLFQIKHTDVIVQRDIILVDDIYTTGATIYDAARILKDAGANSVSSFTLIRS

Nucleotide

• Length: 657 bp

>NTDB_id=729453 N4Q31_RS16470 WP_231730869.1 3184197..3184853(-) (comFC) [Bacillus safensis strain GX-H6]
GTGCCTGCTTTTACATGGAAATCATTCCTACTATTAAATGATGATCGTCTTTGTGTAGCATGTAAGAATGACTTAGTAAA
GATTGAGCGTCCTATTTGTCCAACGTGTGGAAGGGCGCAGTCAAATGACCAAATGTGTCAGGACTGTGATAGATGGAATG
AACGCCCTGATTCTACTAAAGTCCTTGTGAAAAATAGATCAGTTTATACTTACAATGAATTGATGAAAGATGTCCTTGCC
CGCTTTAAATTTCGGGGTGATACGGCTTTAGTTGAGCTGTTTAAACGAGATGTACAAGCAGCATTTAAACATTCCTTCAG
CATAAAAGAACCACTGCTGATTCCGATCCCTTTAAGTCATGAAAGACTAAAAGAAAGAGGATTTAATCAGTCCGTCATCA
TCGCTTCCTTGATAGGTAAGCCAATATTGCAGCCACTCGTGAAAATACATCAAAGTAAGCAGTCCAAAAAAAAGAAAAAT
GAACGCCTAGATCAAAAAGGATTGTTTCAAATAAAGCATACAGATGTGATTGTTCAAAGGGATATTATATTAGTTGATGA
TATCTATACAACGGGAGCAACCATTTATGATGCAGCAAGAATTTTAAAAGACGCAGGTGCCAATAGTGTTTCTTCTTTTA
CGTTGATACGTAGTTAA

Domains

Predicted by InterproScan.

• Phosphoribosyl transferase domain (Pribosyltran) (132-216)

• Double zinc ribbon domain (DZR_2) (14-49)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	48.611	99.083	0.482
comFC/cflB	Streptococcus pneumoniae TIGR4	38.14	98.624	0.376
comFC/cflB	Streptococcus pneumoniae D39	38.14	98.624	0.376
comFC/cflB	Streptococcus pneumoniae R6	38.14	98.624	0.376
comFC/cflB	Streptococcus pneumoniae Rx1	38.14	98.624	0.376
comFC/cflB	Streptococcus mitis SK321	37.674	98.624	0.372
comFC/cflB	Streptococcus mitis NCTC 12261	37.674	98.624	0.372