Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   N4Q31_RS16480 Genome accession   NZ_CP104391
Coordinates   3185223..3186620 (-) Length   465 a.a.
NCBI ID   WP_391509951.1    Uniprot ID   -
Organism   Bacillus safensis strain GX-H6     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3180223..3191620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4Q31_RS16445 (N4Q31_16445) flgL 3180423..3181331 (-) 909 WP_058837540.1 flagellar hook-associated protein FlgL -
  N4Q31_RS16450 (N4Q31_16450) flgK 3181341..3182861 (-) 1521 WP_058837539.1 flagellar hook-associated protein FlgK -
  N4Q31_RS16455 (N4Q31_16455) - 3182877..3183359 (-) 483 WP_059376486.1 flagellar protein FlgN -
  N4Q31_RS16460 (N4Q31_16460) flgM 3183378..3183641 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  N4Q31_RS16465 (N4Q31_16465) - 3183721..3184140 (-) 420 WP_039181808.1 TIGR03826 family flagellar region protein -
  N4Q31_RS16470 (N4Q31_16470) comFC 3184197..3184853 (-) 657 WP_231730869.1 ComF family protein Machinery gene
  N4Q31_RS16475 (N4Q31_16475) - 3184880..3185173 (-) 294 WP_059376485.1 late competence development ComFB family protein -
  N4Q31_RS16480 (N4Q31_16480) comFA 3185223..3186620 (-) 1398 WP_391509951.1 DEAD/DEAH box helicase Machinery gene
  N4Q31_RS16485 (N4Q31_16485) - 3186741..3187583 (-) 843 WP_039181815.1 DegV family protein -
  N4Q31_RS16490 (N4Q31_16490) degU 3187800..3188489 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  N4Q31_RS16495 (N4Q31_16495) degS 3188554..3189729 (-) 1176 WP_260774922.1 sensor histidine kinase Regulator
  N4Q31_RS16500 (N4Q31_16500) - 3189951..3190619 (+) 669 WP_251181032.1 YigZ family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 53253.16 Da        Isoelectric Point: 9.9737

>NTDB_id=729454 N4Q31_RS16480 WP_391509951.1 3185223..3186620(-) (comFA) [Bacillus safensis strain GX-H6]
MNMDKVMELMRQLHSRHLLTAETRCPQSNLDWLEEKGLVNRTPAIERKANGFTCCRCGVSHKRYFAYSPCEVCQKDCVYC
RSCIMMRKATECGFLYEWTGPQMVETYRAELTWQGELSKGQKRASERMIEAIKNKFDLLVWAVCGAGKTEVLFHGIEYAL
NQGMSVCIATPRTDVVLELEPRLRKAFQGMTIAVLYGGSSQRFQIAPLVIATTHQLMRYKNAFDVVIVDEVDAFPYSMDE
RLQFAVLKAMRKNGGVRIYLSATPSKKMTREVSSGKLEAIKIPLRFHKQPLPVPTFHWIGHWKKKLKKNQLPRKVMNWMQ
RHIANKRRVLLFVPSIATMKKVTKILREHSLNVEGVSADDPDRKQKVQHFRDYVYDVLVTTTILERGVTIPNVQVGVLGS
ESTIFTESALVQISGRVGRHPDYCTGDVFLFHFGLTRSMKQAKKHIVKMNDTAANEFSEKQCGFN

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=729454 N4Q31_RS16480 WP_391509951.1 3185223..3186620(-) (comFA) [Bacillus safensis strain GX-H6]
TTGAATATGGACAAAGTAATGGAACTAATGCGACAGCTGCATTCACGCCATTTGCTCACCGCCGAAACAAGGTGCCCACA
GTCCAATTTGGATTGGTTGGAGGAGAAGGGCTTAGTCAATCGAACACCTGCCATTGAGAGGAAAGCAAATGGTTTTACAT
GCTGCCGGTGCGGTGTATCACACAAGCGGTACTTTGCTTACTCTCCATGTGAAGTGTGTCAAAAGGATTGTGTGTACTGT
AGATCATGCATCATGATGAGAAAAGCAACTGAATGTGGGTTTCTTTATGAATGGACAGGTCCACAAATGGTAGAAACATA
TCGAGCTGAATTAACATGGCAGGGAGAGCTGTCTAAAGGACAAAAAAGAGCGTCAGAAAGAATGATTGAAGCTATCAAAA
ACAAATTTGATCTACTTGTTTGGGCGGTTTGCGGGGCAGGGAAAACGGAGGTGCTTTTTCACGGAATCGAATATGCGTTA
AATCAAGGAATGAGTGTCTGTATTGCGACCCCTAGAACAGATGTTGTGCTTGAACTTGAACCACGGCTTAGAAAAGCATT
TCAAGGGATGACAATAGCCGTACTTTATGGAGGCAGTTCTCAAAGATTTCAGATTGCACCGCTAGTGATCGCCACAACCC
ATCAGCTGATGAGGTACAAAAATGCATTTGATGTGGTCATTGTAGATGAAGTCGATGCCTTTCCTTATTCAATGGATGAA
CGTCTCCAATTTGCTGTTCTAAAGGCGATGAGAAAGAACGGAGGGGTTAGGATTTATTTAAGTGCGACACCCTCTAAAAA
AATGACGAGAGAGGTTTCTAGTGGAAAACTGGAAGCGATAAAAATTCCTTTGCGTTTTCATAAACAACCATTACCCGTAC
CAACCTTTCATTGGATTGGACATTGGAAAAAGAAGTTAAAAAAGAATCAGCTGCCCCGTAAAGTGATGAATTGGATGCAG
AGACATATTGCAAATAAAAGAAGAGTATTACTTTTTGTTCCTTCAATTGCTACCATGAAGAAGGTAACGAAGATTCTTCG
AGAACACTCCTTAAACGTGGAGGGAGTATCTGCTGATGATCCAGATAGGAAACAAAAGGTTCAACACTTTAGAGATTACG
TATACGATGTACTAGTTACAACCACTATTCTAGAAAGAGGCGTAACCATTCCAAATGTTCAAGTGGGGGTATTAGGTTCG
GAATCTACTATTTTTACAGAGAGTGCACTTGTTCAGATTTCTGGAAGAGTAGGCAGACACCCGGATTATTGTACAGGAGA
CGTTTTCCTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATCGTTAAAATGAATGATACGGCTG
CAAATGAGTTTTCTGAAAAACAGTGTGGGTTCAACTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(323-420)

Type III restriction enzyme, res subunit (ResIII)

(116-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.125

96.129

0.501