Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   N4Q31_RS16490 Genome accession   NZ_CP104391
Coordinates   3187800..3188489 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus safensis strain GX-H6     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3182800..3193489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4Q31_RS16455 (N4Q31_16455) - 3182877..3183359 (-) 483 WP_059376486.1 flagellar protein FlgN -
  N4Q31_RS16460 (N4Q31_16460) flgM 3183378..3183641 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  N4Q31_RS16465 (N4Q31_16465) - 3183721..3184140 (-) 420 WP_039181808.1 TIGR03826 family flagellar region protein -
  N4Q31_RS16470 (N4Q31_16470) comFC 3184197..3184853 (-) 657 WP_231730869.1 ComF family protein Machinery gene
  N4Q31_RS16475 (N4Q31_16475) - 3184880..3185173 (-) 294 WP_059376485.1 late competence development ComFB family protein -
  N4Q31_RS16480 (N4Q31_16480) comFA 3185223..3186620 (-) 1398 WP_391509951.1 DEAD/DEAH box helicase Machinery gene
  N4Q31_RS16485 (N4Q31_16485) - 3186741..3187583 (-) 843 WP_039181815.1 DegV family protein -
  N4Q31_RS16490 (N4Q31_16490) degU 3187800..3188489 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  N4Q31_RS16495 (N4Q31_16495) degS 3188554..3189729 (-) 1176 WP_260774922.1 sensor histidine kinase Regulator
  N4Q31_RS16500 (N4Q31_16500) - 3189951..3190619 (+) 669 WP_251181032.1 YigZ family protein -
  N4Q31_RS16505 (N4Q31_16505) - 3190604..3191695 (+) 1092 WP_034623744.1 LCP family protein -
  N4Q31_RS16510 (N4Q31_16510) - 3191731..3192798 (-) 1068 WP_034660156.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=729455 N4Q31_RS16490 WP_008348273.1 3187800..3188489(-) (degU) [Bacillus safensis strain GX-H6]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=729455 N4Q31_RS16490 WP_008348273.1 3187800..3188489(-) (degU) [Bacillus safensis strain GX-H6]
GTGACTAAAGTAAATATTGTAATTATTGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTTGAAGCTACAAAGCAGCTTGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGATGATGAAAACTATGTAACACATGCATTGAAAACAGGAGCGAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACACTCATCGAAGCAGTGAAAGTTGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ATTTAGTAAATGAATTCCGACGCCTAGCAACTAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACTAGACGTGAATGCGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGAATTGG
TGAATCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGCAACATTTTGCAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996