Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   N4Q31_RS08440 Genome accession   NZ_CP104391
Coordinates   1670701..1671951 (+) Length   416 a.a.
NCBI ID   WP_064498481.1    Uniprot ID   -
Organism   Bacillus safensis strain GX-H6     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1665701..1676951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4Q31_RS08415 (N4Q31_08415) ymfI 1667122..1667850 (+) 729 WP_039178709.1 elongation factor P 5-aminopentanone reductase -
  N4Q31_RS08420 (N4Q31_08420) - 1667924..1668181 (+) 258 WP_024424114.1 DUF3243 domain-containing protein -
  N4Q31_RS08425 (N4Q31_08425) - 1668313..1669104 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  N4Q31_RS08430 (N4Q31_08430) - 1669128..1670027 (+) 900 WP_059376236.1 helix-turn-helix domain-containing protein -
  N4Q31_RS08435 (N4Q31_08435) pgsA 1670103..1670684 (+) 582 WP_047202208.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  N4Q31_RS08440 (N4Q31_08440) cinA 1670701..1671951 (+) 1251 WP_064498481.1 competence/damage-inducible protein A Machinery gene
  N4Q31_RS08445 (N4Q31_08445) recA 1672131..1673174 (+) 1044 WP_039178719.1 recombinase RecA Machinery gene
  N4Q31_RS08450 (N4Q31_08450) - 1673317..1674492 (+) 1176 WP_260775947.1 serine hydrolase -
  N4Q31_RS08455 (N4Q31_08455) rny 1674726..1676288 (+) 1563 WP_003211958.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45636.70 Da        Isoelectric Point: 4.7487

>NTDB_id=729429 N4Q31_RS08440 WP_064498481.1 1670701..1671951(+) (cinA) [Bacillus safensis strain GX-H6]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKQAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQDYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFVQEDDTFYMLLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLASDGEVTLRLTAKHEDEKETERLL
KETEAKILARVGEYFYGYGDTSLVREASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILNGSVVCYTNQVKQQVLG
CREETLSSYGAVSKECALELAEGVRKLTGSDIGISFTGVAGPDTQEGQPVGKVFIGLSTKDQTDVFEWMFTGSRSGIRKR
AVKYGLHHLLNLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=729429 N4Q31_RS08440 WP_064498481.1 1670701..1671951(+) (cinA) [Bacillus safensis strain GX-H6]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTCTTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAACTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AACAGGCCATTCAGGTGGCGCAGGAAAGATCTAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACCAAAGATGACTTA
ACAAAAGAAACAATTGCGAGCACGCTTGGTAAAGAGCTTGTACTAAATGAAGAAGCATTTGAATCGATTCAAGACTACTT
TCGAAAGACCGGCCGCGATATGTCACCGAACAACCGTAAGCAGGCACTCGTTCTAGAAGGATCAGATGTGCTCGTGAACC
GTTTCGGGATGGCTCCAGGTATGTTTGTTCAAGAAGACGATACGTTTTATATGCTTCTTCCTGGACCGCCAAGTGAATTG
CACCCGATGTTTGAAAACGAGGCAAAGCCGCTGATTTCTGAGAAACTTGGCTTAAAGGAAAAAATTGTGTCTGTTGTTCT
GCGTTTCTTCGGAATCGGTGAATCGCAGCTTGAAACAGATCTAGAAGATTTAATTGATGCTCAAACCAACCCGACGATTG
CACCACTCGCATCTGACGGTGAAGTGACGCTAAGGCTGACTGCTAAGCATGAGGATGAAAAAGAAACAGAACGTCTGTTA
AAAGAAACAGAGGCGAAAATTTTAGCGCGGGTAGGTGAGTACTTCTACGGATATGGGGATACATCACTTGTCCGCGAAGC
GTCCAAAGCCTTGCACGAGCACGGGAAAACAGTAGCAGCAGCAGAAAGTCTGACTGGTGGAATGTTCTCCGAATGGCTGA
CAGATCTCGAAGGGGCATCATCCATTTTGAACGGAAGTGTGGTTTGTTATACAAACCAAGTAAAGCAGCAGGTACTTGGC
TGCCGGGAAGAAACACTGTCTTCTTATGGTGCTGTCAGCAAAGAGTGCGCTTTAGAGCTTGCTGAAGGGGTTAGAAAGCT
GACCGGAAGTGATATTGGCATTAGCTTTACGGGTGTAGCAGGACCTGATACCCAAGAGGGTCAGCCTGTTGGAAAAGTGT
TCATTGGACTATCGACGAAAGACCAGACGGACGTGTTTGAATGGATGTTTACAGGCAGCCGGTCAGGCATTCGAAAGCGC
GCTGTGAAATATGGTCTACATCACTTACTCAACTTATTAAAAGAGAGTTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(262-412)

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

75.422

99.76

0.752
  cinA Streptococcus mitis SK321

47.743

100

0.483
  cinA Streptococcus mutans UA159

48.077

100

0.481
  cinA Streptococcus mitis NCTC 12261

47.506

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.268

100

0.478
  cinA Streptococcus pneumoniae Rx1

47.031

100

0.476
  cinA Streptococcus pneumoniae R6

47.031

100

0.476
  cinA Streptococcus pneumoniae D39

46.793

100

0.474
  cinA Streptococcus suis isolate S10

43.122

90.865

0.392