Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   N4P52_RS06860 Genome accession   NZ_CP104390
Coordinates   1482588..1483820 (+) Length   410 a.a.
NCBI ID   WP_014098503.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain JBI-YZ6.3     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1477588..1488820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4P52_RS06835 (N4P52_06835) - 1478712..1479434 (+) 723 WP_061577234.1 SDR family oxidoreductase -
  N4P52_RS06840 (N4P52_06840) - 1479618..1479878 (+) 261 WP_061577235.1 DUF3243 domain-containing protein -
  N4P52_RS06845 (N4P52_06845) - 1480076..1480867 (+) 792 WP_014098506.1 DUF3388 domain-containing protein -
  N4P52_RS06850 (N4P52_06850) - 1480884..1481789 (+) 906 WP_035188569.1 RodZ family helix-turn-helix domain-containing protein -
  N4P52_RS06855 (N4P52_06855) pgsA 1481846..1482424 (+) 579 WP_046720784.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  N4P52_RS06860 (N4P52_06860) cinA 1482588..1483820 (+) 1233 WP_014098503.1 competence/damage-inducible protein A Machinery gene
  N4P52_RS06865 (N4P52_06865) recA 1484088..1485155 (+) 1068 WP_014098502.1 recombinase RecA Machinery gene
  N4P52_RS06870 (N4P52_06870) rny 1485638..1487200 (+) 1563 WP_014098501.1 ribonuclease Y -
  N4P52_RS06875 (N4P52_06875) - 1487287..1488087 (+) 801 WP_014098500.1 TIGR00282 family metallophosphoesterase -
  N4P52_RS06880 (N4P52_06880) spoVS 1488462..1488722 (+) 261 WP_014098499.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44969.71 Da        Isoelectric Point: 5.6864

>NTDB_id=729376 N4P52_RS06860 WP_014098503.1 1482588..1483820(+) (cinA) [Heyndrickxia coagulans strain JBI-YZ6.3]
MNAEIIAVGSELLLGQITNTNATFIAAQLAEIGVDVYYQTVVGDNAERLEAAIRTAEGRADLLIFTGGLGPTKDDLTKET
IASHIEKKLVTNEDAMRSIEQFFIRTKRKMTENNKKQALVIEGSKVFPNDHGMAPGMLAKSGNHYYMLLPGPPHELEPMF
IHYASPAIQEELETIEKIESRVLRFFGIGESQLETEIRHILDSQTNPTVAPLAKEGEVTLRITAKHQSAETANEMIDQVE
KEIMQIAGSYFYGYNDMTLMEALLEKLSKKQLTLACAESLTAGKFAAEMASIQGVSTMLKGGVVVYSNEAKMKLAKVKKE
TLDKYGAVSSQCAKELAENIRSIMDADIGISFTGVAGPDSLEGHPPGTVWIGIAIKGKETATYLLELPGSRNNIRTRSVK
YGCWHLLKLL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=729376 N4P52_RS06860 WP_014098503.1 1482588..1483820(+) (cinA) [Heyndrickxia coagulans strain JBI-YZ6.3]
GTGAATGCCGAAATTATTGCAGTCGGTTCGGAACTTTTGCTTGGCCAGATCACCAATACAAATGCCACATTTATTGCCGC
ACAATTGGCGGAGATCGGCGTGGATGTGTACTACCAGACCGTTGTCGGCGATAACGCAGAGCGGCTCGAAGCGGCAATCC
GGACAGCGGAGGGCCGCGCCGATCTATTGATTTTTACTGGTGGGCTCGGTCCGACAAAGGATGATTTAACAAAAGAAACG
ATTGCATCGCACATCGAAAAAAAACTGGTGACAAACGAAGATGCCATGCGCTCCATCGAACAGTTTTTTATCCGTACAAA
ACGAAAAATGACGGAAAACAACAAAAAGCAGGCACTGGTCATCGAAGGTTCAAAAGTGTTTCCGAATGACCACGGTATGG
CGCCGGGCATGCTGGCCAAAAGCGGAAACCATTATTATATGCTGCTGCCCGGCCCGCCGCATGAACTGGAACCGATGTTT
ATCCATTACGCCAGCCCCGCAATCCAGGAAGAACTGGAAACGATCGAAAAAATCGAATCGCGCGTTCTCCGCTTCTTCGG
GATCGGCGAATCCCAGCTGGAAACAGAAATCCGCCATATATTGGATAGCCAAACCAATCCGACTGTCGCTCCGCTTGCGA
AAGAAGGGGAAGTGACACTTAGGATTACGGCGAAACACCAGTCGGCGGAAACGGCGAACGAAATGATCGATCAAGTGGAA
AAAGAGATTATGCAAATTGCCGGATCGTATTTTTACGGTTATAATGATATGACATTAATGGAGGCCCTGCTCGAAAAGCT
TTCGAAAAAACAGCTGACGCTTGCCTGCGCGGAAAGTCTGACTGCCGGCAAATTTGCAGCGGAAATGGCGTCCATCCAGG
GTGTCAGCACAATGTTGAAAGGCGGCGTTGTCGTCTATTCAAACGAAGCGAAGATGAAGCTTGCCAAAGTGAAAAAAGAA
ACGCTTGACAAGTACGGCGCCGTCAGCAGCCAGTGTGCAAAAGAACTGGCGGAAAATATCCGCAGCATTATGGATGCCGA
CATTGGCATCAGTTTTACAGGCGTGGCTGGCCCGGACTCCCTTGAAGGCCATCCGCCGGGAACCGTGTGGATCGGCATTG
CGATAAAAGGGAAAGAAACTGCCACTTATCTGTTGGAACTTCCCGGATCCCGCAACAACATCCGCACGCGATCGGTGAAA
TACGGCTGCTGGCATTTGCTGAAACTGCTTTAG

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

56.618

99.512

0.563
  cinA Streptococcus pneumoniae TIGR4

45.933

100

0.468
  cinA Streptococcus mitis NCTC 12261

45.476

100

0.466
  cinA Streptococcus pneumoniae R6

45.455

100

0.463
  cinA Streptococcus pneumoniae Rx1

45.455

100

0.463
  cinA Streptococcus pneumoniae D39

45.215

100

0.461
  cinA Streptococcus mitis SK321

48.564

93.415

0.454
  cinA Streptococcus mutans UA159

44.417

98.293

0.437
  cinA Streptococcus suis isolate S10

39.418

92.195

0.363