Detailed information    

insolico Bioinformatically predicted

Overview


Name   prx   Type   Regulator
Locus tag   C11O2_RS05985 Genome accession   NZ_AP019548
Coordinates   1169309..1169491 (-) Length   60 a.a.
NCBI ID   WP_011017964.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 10-85     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1145312..1203521 1169309..1169491 within 0


Gene organization within MGE regions


Location: 1145312..1203521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C11O2_RS05875 (A85_10830) - 1145312..1146424 (-) 1113 WP_001842570.1 recombinase family protein -
  C11O2_RS05880 (A85_10840) - 1146553..1147188 (-) 636 WP_000207454.1 CpXC domain-containing protein -
  C11O2_RS05885 (A85_10850) - 1147320..1148999 (-) 1680 Protein_1088 ComEC/Rec2 family competence protein -
  C11O2_RS05890 (A85_10860) - 1148980..1149642 (-) 663 WP_002983967.1 ComEA family DNA-binding protein -
  C11O2_RS05895 (A85_10870) - 1149842..1150582 (-) 741 WP_011285604.1 lysophospholipid acyltransferase family protein -
  C11O2_RS05900 (A85_10880) - 1150700..1151476 (+) 777 WP_010922438.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  C11O2_RS05905 (A85_10890) - 1151466..1151744 (+) 279 WP_002989164.1 GIY-YIG nuclease family protein -
  C11O2_RS05910 (A85_10900) - 1151768..1153768 (-) 2001 WP_010922439.1 potassium transporter Kup -
  C11O2_RS05915 (A85_10910) - 1153896..1155515 (-) 1620 WP_002989158.1 DEAD/DEAH box helicase -
  C11O2_RS05920 (A85_10920) - 1155822..1157366 (-) 1545 WP_002989155.1 peptide chain release factor 3 -
  C11O2_RS05930 (A85_10930) - 1157614..1158309 (-) 696 WP_011285607.1 TIGR02206 family membrane protein -
  C11O2_RS05935 (A85_10940) - 1158389..1159780 (-) 1392 WP_010922441.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  C11O2_RS05940 (A85_10950) - 1159971..1161017 (-) 1047 WP_002989146.1 D-alanine--D-alanine ligase -
  C11O2_RS05945 (A85_10960) recR 1161118..1161714 (-) 597 WP_002983939.1 recombination mediator RecR -
  C11O2_RS09300 (A85_10970) - 1161761..1161952 (-) 192 WP_011285608.1 hypothetical protein -
  C11O2_RS05955 (A85_10980) - 1162513..1163292 (-) 780 WP_002989141.1 formate/nitrite transporter family protein -
  C11O2_RS05960 (A85_10990) - 1163416..1163958 (-) 543 WP_002989140.1 hypothetical protein -
  C11O2_RS05965 (A85_11000) - 1164119..1164640 (-) 522 WP_002983930.1 transcription repressor NadR -
  C11O2_RS05970 (A85_11010) - 1164747..1165442 (-) 696 WP_002983928.1 phosphoglycerate mutase -
  C11O2_RS05975 (A85_11020) - 1165681..1166616 (+) 936 WP_010922443.1 dihydroorotate oxidase -
  C11O2_RS05980 (A85_11040) - 1166916..1168778 (-) 1863 WP_011285610.1 heavy metal translocating P-type ATPase -
  C11O2_RS05985 (A85_11050) prx 1169309..1169491 (-) 183 WP_011017964.1 hypothetical protein Regulator
  C11O2_RS05990 (A85_11060) sda3 1169730..1170530 (+) 801 WP_011285611.1 streptodornase Sda3 -
  C11O2_RS05995 (A85_11070) - 1170801..1171235 (+) 435 WP_011017966.1 hypothetical protein -
  C11O2_RS06000 (A85_11080) - 1171305..1172510 (-) 1206 WP_010922446.1 glucosaminidase domain-containing protein -
  C11O2_RS06005 (A85_11090) - 1172626..1172853 (-) 228 WP_003058873.1 phage holin -
  C11O2_RS06010 (A85_11100) - 1172850..1173125 (-) 276 WP_002987582.1 hypothetical protein -
  C11O2_RS06015 (A85_11110) - 1173135..1173431 (-) 297 Protein_1113 hypothetical protein -
  C11O2_RS06020 (A85_11120) - 1173422..1173784 (-) 363 Protein_1114 phage tail protein -
  C11O2_RS06025 (A85_11130) - 1173777..1174241 (-) 465 WP_142235930.1 capsid assembly scaffolding protein Gp46 family protein -
  C11O2_RS06030 (A85_11140) - 1174322..1175365 (-) 1044 Protein_1116 terminase -
  C11O2_RS06035 (A85_11150) - 1175368..1175622 (-) 255 Protein_1117 hypothetical protein -
  C11O2_RS06040 (A85_11160) - 1175619..1175975 (-) 357 WP_002994106.1 hypothetical protein -
  C11O2_RS06045 (A85_11170) - 1176124..1176468 (-) 345 WP_010922469.1 HNH endonuclease signature motif containing protein -
  C11O2_RS06050 (A85_11180) - 1176577..1176996 (-) 420 WP_010922470.1 DUF1492 domain-containing protein -
  C11O2_RS06055 (A85_11190) - 1177264..1177899 (-) 636 WP_010922070.1 N-6 DNA methylase -
  C11O2_RS06060 - 1177901..1178110 (-) 210 WP_415245494.1 hypothetical protein -
  C11O2_RS09205 - 1178093..1178314 (-) 222 Protein_1123 transcriptional regulator -
  C11O2_RS06065 (A85_11210) - 1178414..1178599 (-) 186 WP_011285628.1 hypothetical protein -
  C11O2_RS06070 (A85_11220) - 1178601..1178912 (-) 312 WP_002990080.1 hypothetical protein -
  C11O2_RS06075 (A85_11230) - 1178990..1179175 (-) 186 WP_011054585.1 helix-turn-helix domain-containing protein -
  C11O2_RS06080 (A85_11240) - 1179342..1179581 (+) 240 WP_011284879.1 hypothetical protein -
  C11O2_RS06085 (A85_11250) - 1179723..1180529 (+) 807 WP_011285629.1 TIGR02391 family protein -
  C11O2_RS06090 (A85_11260) - 1180464..1180730 (-) 267 WP_010922204.1 hypothetical protein -
  C11O2_RS06095 (A85_11270) - 1180762..1181478 (-) 717 WP_011285630.1 phage antirepressor KilAC domain-containing protein -
  C11O2_RS06100 (A85_11280) - 1181490..1181681 (-) 192 WP_002993390.1 hypothetical protein -
  C11O2_RS06105 - 1182317..1182412 (+) 96 WP_020837421.1 type I toxin-antitoxin system Fst family toxin -
  C11O2_RS06110 (A85_11290) - 1182835..1183182 (+) 348 WP_011285631.1 helix-turn-helix domain-containing protein -
  C11O2_RS06115 (A85_11300) - 1183186..1183566 (+) 381 WP_002994744.1 ImmA/IrrE family metallo-endopeptidase -
  C11O2_RS06120 (A85_11310) - 1183578..1183844 (+) 267 WP_011285632.1 DUF4177 domain-containing protein -
  C11O2_RS06125 (A85_11320) - 1183968..1185110 (+) 1143 WP_003051793.1 tyrosine-type recombinase/integrase -
  C11O2_RS06130 (A85_11330) - 1185200..1185475 (-) 276 WP_002983920.1 HU family DNA-binding protein -
  C11O2_RS06135 (A85_11340) - 1185574..1186161 (-) 588 WP_010922482.1 YpmS family protein -
  C11O2_RS06140 (A85_11350) - 1186139..1186981 (-) 843 WP_002992620.1 SGNH/GDSL hydrolase family protein -
  C11O2_RS06145 (A85_11360) - 1186974..1187813 (-) 840 WP_002989125.1 DegV family protein -
  C11O2_RS06150 (A85_11370) - 1188041..1188982 (-) 942 WP_011285633.1 LPXTG cell wall anchor domain-containing protein -
  C11O2_RS06155 (A85_11380) recN 1189154..1190815 (-) 1662 WP_010922485.1 DNA repair protein RecN -
  C11O2_RS06160 (A85_11390) - 1190837..1191307 (-) 471 WP_002983907.1 arginine repressor -
  C11O2_RS06165 (A85_11400) - 1191294..1192121 (-) 828 WP_003056952.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  C11O2_RS06170 (A85_11410) - 1192114..1192986 (-) 873 WP_003056941.1 polyprenyl synthetase family protein -
  C11O2_RS06175 (A85_11420) - 1192986..1193201 (-) 216 WP_002983901.1 exodeoxyribonuclease VII small subunit -
  C11O2_RS06180 (A85_11430) xseA 1193179..1194519 (-) 1341 WP_002992349.1 exodeoxyribonuclease VII large subunit -
  C11O2_RS06185 (A85_11440) - 1194672..1195526 (-) 855 WP_010922486.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  C11O2_RS06190 (A85_11450) - 1195734..1197428 (-) 1695 WP_002989112.1 phospho-sugar mutase -
  C11O2_RS06195 (A85_11460) - 1197606..1199015 (-) 1410 WP_010922487.1 cryptochrome/photolyase family protein -
  C11O2_RS06200 (A85_11470) - 1199164..1199898 (-) 735 WP_010922488.1 amino acid ABC transporter ATP-binding protein -
  C11O2_RS06205 (A85_11480) - 1199898..1200584 (-) 687 WP_002983887.1 amino acid ABC transporter permease -
  C11O2_RS06210 (A85_11490) - 1200711..1200941 (-) 231 WP_002983885.1 YkuJ family protein -
  C11O2_RS06215 (A85_11500) clpE 1201239..1203521 (+) 2283 WP_010922489.1 ATP-dependent Clp protease ATP-binding subunit Regulator

Sequence


Protein


Download         Length: 60 a.a.        Molecular weight: 6841.79 Da        Isoelectric Point: 4.5183

>NTDB_id=72886 C11O2_RS05985 WP_011017964.1 1169309..1169491(-) (prx) [Streptococcus pyogenes strain 10-85]
MLTYDEFKQAIDNGYIAGDTVAIVRKDGQIFDYVLPHEKVKNGEVVTKEKVEEVLVELSR

Nucleotide


Download         Length: 183 bp        

>NTDB_id=72886 C11O2_RS05985 WP_011017964.1 1169309..1169491(-) (prx) [Streptococcus pyogenes strain 10-85]
ATGCTAACATACGACGAGTTTAAGCAAGCGATTGACAATGGATATATCGCAGGCGATACAGTAGCGATCGTGCGTAAAGA
CGGACAGATTTTTGATTATGTGTTGCCACATGAGAAAGTAAAGAATGGAGAAGTTGTGACTAAGGAAAAAGTGGAAGAGG
TGCTGGTGGAGCTTTCGAGATAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS8232

100

100

1

  prx Streptococcus pyogenes MGAS315

85

100

0.85

  prx Streptococcus pyogenes MGAS315

80

100

0.8

  prx Streptococcus pyogenes MGAS315

73.333

100

0.733

  prx Streptococcus pyogenes MGAS315

90.244

68.333

0.617

  prx Streptococcus pyogenes MGAS315

83.721

71.667

0.6

  prx Streptococcus pyogenes MGAS315

78.571

70

0.55


Multiple sequence alignment