Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   W01_RS08305 Genome accession   NZ_AP019547
Coordinates   1862416..1863633 (+) Length   405 a.a.
NCBI ID   WP_173053743.1    Uniprot ID   -
Organism   Candidatus Nitrotoga sp. AM1P     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1857416..1868633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  W01_RS08285 (W01_16170) - 1857799..1859019 (-) 1221 WP_173053737.1 MltA domain-containing protein -
  W01_RS13930 (W01_16180) - 1859436..1860320 (+) 885 WP_198421271.1 hypothetical protein -
  W01_RS08295 (W01_16190) - 1860393..1860797 (-) 405 WP_173053739.1 hypothetical protein -
  W01_RS08300 (W01_16200) - 1860809..1861753 (-) 945 WP_173053741.1 PEP-CTERM sorting domain-containing protein -
  W01_RS08305 (W01_16220) pilC 1862416..1863633 (+) 1218 WP_173053743.1 type II secretion system F family protein Machinery gene
  W01_RS08310 (W01_16230) pilD 1863974..1864846 (+) 873 WP_173053746.1 A24 family peptidase Machinery gene
  W01_RS08315 (W01_16240) coaE 1864843..1865469 (+) 627 WP_173053748.1 dephospho-CoA kinase -
  W01_RS08320 (W01_16250) zapD 1865536..1866291 (+) 756 WP_173053750.1 cell division protein ZapD -
  W01_RS08325 (W01_16260) yacG 1866398..1866586 (+) 189 WP_198421394.1 DNA gyrase inhibitor YacG -
  W01_RS08330 (W01_16270) - 1866574..1867554 (-) 981 WP_242006917.1 Nudix family hydrolase -
  W01_RS08335 (W01_16280) - 1867659..1868357 (-) 699 WP_173053756.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44225.27 Da        Isoelectric Point: 10.0264

>NTDB_id=72845 W01_RS08305 WP_173053743.1 1862416..1863633(+) (pilC) [Candidatus Nitrotoga sp. AM1P]
MAAEKLKKKEFQFRWEGKDKFGKPVKGEVRAVGDAVAATQLRRLGINVTSIKKTHSGGGKKITQKDLTLFTRQLAVMMKS
GVPLLQSFDIVGKGHNNPSVSRLLNDIKTDVETGSSLEQAFRKFPLYFDDLFCNLIGAGEHAGILDSLLERLATYQEKTL
AIKSKIKGALMYPVSIIAIAFIITAVIMIFVIPAFKQLFSSFGADLPAPTLIMMSISDFFVAYWWAIFSIIGGGLYSFFY
FWKRNKKMQDVIDRIMLKLPIFGNVIRKASIARWTRTLATMFAAGVPLVEALNSVAGAAGNVVYFDATKIIQREVSQGGT
LTAAMQNVGVFPSMVLQMVAIGEEAGSLDGMLNKVADFFEAEVDDAVAALASLMEPIIMVVLGTLIGGMVIAMYLPIFKM
GQAVG

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=72845 W01_RS08305 WP_173053743.1 1862416..1863633(+) (pilC) [Candidatus Nitrotoga sp. AM1P]
ATGGCAGCGGAAAAACTGAAAAAAAAAGAATTCCAATTTCGATGGGAGGGTAAAGATAAATTCGGCAAGCCGGTAAAAGG
CGAGGTACGGGCTGTCGGCGATGCCGTTGCTGCCACTCAACTGAGACGTCTAGGCATTAATGTTACCAGTATCAAAAAAA
CCCACAGTGGCGGAGGAAAAAAGATCACCCAGAAAGATCTCACTCTGTTTACACGCCAGCTTGCGGTCATGATGAAATCC
GGCGTACCGCTACTACAATCATTCGACATTGTAGGTAAGGGACACAACAACCCTTCCGTTTCCCGCCTGCTGAATGACAT
TAAAACCGATGTAGAAACCGGTAGCAGTTTGGAACAGGCATTCCGGAAATTCCCACTATATTTTGACGATCTGTTTTGCA
ATCTAATCGGCGCGGGCGAGCACGCCGGTATTTTGGACAGCTTGCTGGAACGTTTAGCGACCTACCAGGAAAAAACGCTG
GCCATCAAGAGCAAAATCAAAGGGGCGTTAATGTATCCCGTTTCAATTATTGCAATCGCCTTTATTATCACCGCAGTGAT
CATGATTTTTGTGATCCCAGCGTTTAAGCAATTATTCTCCAGCTTTGGCGCCGATCTGCCCGCACCTACACTCATTATGA
TGAGCATCTCCGATTTTTTCGTAGCTTATTGGTGGGCGATCTTCAGTATTATCGGGGGCGGACTTTACAGTTTCTTCTAC
TTCTGGAAACGTAACAAAAAAATGCAGGACGTCATAGATAGAATAATGCTCAAGCTACCAATTTTTGGAAATGTAATCCG
TAAAGCCTCCATAGCACGCTGGACACGTACACTGGCAACCATGTTTGCTGCCGGAGTACCACTGGTGGAGGCGCTTAATT
CGGTAGCAGGTGCTGCGGGCAACGTGGTGTATTTTGATGCGACCAAGATAATCCAGCGAGAAGTCAGCCAAGGTGGCACC
CTAACGGCAGCCATGCAAAATGTAGGGGTATTTCCCAGCATGGTGCTGCAAATGGTAGCAATCGGCGAAGAAGCAGGTTC
ACTGGATGGTATGTTAAACAAAGTCGCAGATTTTTTTGAGGCTGAGGTAGATGATGCAGTGGCGGCGTTGGCCAGCCTGA
TGGAACCTATCATCATGGTGGTGCTAGGCACACTAATAGGCGGTATGGTAATAGCAATGTACCTACCCATTTTCAAGATG
GGACAAGCTGTTGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(70-193)

Type II secretion system (T2SS), protein F (T2SSF)

(274-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

51.515

97.778

0.504
  pilG Neisseria gonorrhoeae MS11

50.503

98.272

0.496
  pilC Pseudomonas stutzeri DSM 10701

50.886

97.531

0.496
  pilG Neisseria meningitidis 44/76-A

50.125

98.519

0.494
  pilC Acinetobacter baumannii D1279779

48.866

98.025

0.479
  pilC Acinetobacter baylyi ADP1

48.111

98.025

0.472
  pilC Vibrio cholerae strain A1552

38.71

99.506

0.385
  pilC Vibrio campbellii strain DS40M4

37.562

99.259

0.373

Multiple sequence alignment