Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilAI   Type   Machinery gene
Locus tag   K7568_RS16555 Genome accession   NZ_CP104288
Coordinates   3567554..3567961 (-) Length   135 a.a.
NCBI ID   WP_043035128.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain ACYCa.2H     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3562554..3572961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7568_RS16545 (K7568_16545) pilR 3564099..3565472 (+) 1374 WP_005410795.1 sigma-54 dependent transcriptional regulator Regulator
  K7568_RS16550 (K7568_16550) pilB 3565598..3567331 (-) 1734 WP_043035127.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K7568_RS16555 (K7568_16555) pilA/pilAI 3567554..3567961 (-) 408 WP_043035128.1 pilin Machinery gene
  K7568_RS16560 (K7568_16560) - 3568114..3568551 (-) 438 WP_043035129.1 pilin -
  K7568_RS16565 (K7568_16565) pilC 3568904..3570163 (+) 1260 WP_099474767.1 type II secretion system F family protein Machinery gene
  K7568_RS16570 (K7568_16570) - 3570171..3571034 (+) 864 WP_005410800.1 A24 family peptidase -
  K7568_RS16575 (K7568_16575) coaE 3571046..3571657 (+) 612 WP_049452340.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14326.48 Da        Isoelectric Point: 5.5999

>NTDB_id=728296 K7568_RS16555 WP_043035128.1 3567554..3567961(-) (pilA/pilAI) [Stenotrophomonas maltophilia strain ACYCa.2H]
MNTQKGFTLIELMIVVAIIGILAAIATVAFQPYIIRTQLTAALADISPGKMLVETVVYENRSASLVTPEFIGGAQNAHCS
NVEAELSDSGVGHISCTLKGHSALDGKDLILRRSAEGIWSCDGSAFEARYRPTGC

Nucleotide


Download         Length: 408 bp        

>NTDB_id=728296 K7568_RS16555 WP_043035128.1 3567554..3567961(-) (pilA/pilAI) [Stenotrophomonas maltophilia strain ACYCa.2H]
ATGAACACGCAGAAGGGCTTTACGCTCATCGAGCTGATGATCGTGGTGGCCATCATCGGCATTCTGGCGGCCATCGCGAC
GGTGGCGTTCCAGCCATACATCATCCGTACCCAGCTGACGGCCGCGCTGGCCGACATCAGCCCGGGCAAGATGCTGGTTG
AAACGGTCGTCTATGAAAACCGCTCGGCCAGCCTGGTCACCCCCGAGTTCATCGGCGGTGCCCAGAACGCCCACTGCTCG
AACGTTGAAGCCGAACTCAGCGATTCCGGTGTCGGCCACATCAGCTGCACCCTCAAGGGACACAGCGCGCTGGACGGCAA
GGACCTGATCCTGCGCCGCTCCGCCGAGGGCATCTGGAGCTGCGATGGCAGCGCGTTCGAAGCGCGCTATCGCCCGACCG
GCTGCTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(36-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilAI Pseudomonas stutzeri DSM 10701

48.529

100

0.489
  pilA/pilAII Pseudomonas stutzeri DSM 10701

42.647

100

0.43
  pilA Acinetobacter baumannii strain A118

41.606

100

0.422
  pilA2 Legionella pneumophila strain ERS1305867

41.304

100

0.422
  pilA Pseudomonas aeruginosa PAK

37.748

100

0.422
  pilA2 Legionella pneumophila str. Paris

40.299

99.259

0.4
  comP Acinetobacter baylyi ADP1

36

100

0.4
  pilA Ralstonia pseudosolanacearum GMI1000

37.594

98.519

0.37