Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   N0B28_RS22090 Genome accession   NZ_CP104044
Coordinates   4847482..4848690 (+) Length   402 a.a.
NCBI ID   WP_275728772.1    Uniprot ID   -
Organism   Pseudomonas sp. SD17-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4842482..4853690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N0B28_RS22060 (N0B28_22075) - 4842511..4842897 (+) 387 WP_275728764.1 TIR domain-containing protein -
  N0B28_RS22065 (N0B28_22080) - 4842897..4843883 (+) 987 WP_275728767.1 caspase family protein -
  N0B28_RS22070 (N0B28_22085) - 4844499..4844591 (-) 93 Protein_4345 integrase -
  N0B28_RS22075 (N0B28_22090) - 4845519..4846454 (-) 936 Protein_4346 site-specific integrase -
  N0B28_RS22085 (N0B28_22100) - 4846837..4847265 (-) 429 WP_275728770.1 pilin -
  N0B28_RS22090 (N0B28_22105) pilC 4847482..4848690 (+) 1209 WP_275728772.1 type II secretion system F family protein Machinery gene
  N0B28_RS22095 (N0B28_22110) pilD 4848693..4849562 (+) 870 WP_275728775.1 A24 family peptidase Machinery gene
  N0B28_RS22100 (N0B28_22115) coaE 4849559..4850182 (+) 624 WP_078479476.1 dephospho-CoA kinase -
  N0B28_RS22105 (N0B28_22120) yacG 4850179..4850382 (+) 204 WP_043860325.1 DNA gyrase inhibitor YacG -
  N0B28_RS22110 (N0B28_22125) - 4850379..4851068 (-) 690 WP_043860324.1 energy-coupling factor ABC transporter permease -
  N0B28_RS22115 (N0B28_22130) - 4851198..4851827 (+) 630 WP_043860323.1 DUF1780 domain-containing protein -
  N0B28_RS22120 (N0B28_22135) - 4851996..4852169 (+) 174 WP_043860322.1 DUF3094 family protein -
  N0B28_RS22125 (N0B28_22140) - 4852260..4853555 (+) 1296 WP_236176793.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43383.15 Da        Isoelectric Point: 10.2793

>NTDB_id=727189 N0B28_RS22090 WP_275728772.1 4847482..4848690(+) (pilC) [Pseudomonas sp. SD17-1]
MNHKTKTYAWQGIDRSGAHVSGHRSGQNSALVKALLRGRGIRPTQVNAARRITLQLPASLGAKDITRFSRQLATLFKAGV
PLLQGLGMIAEGINNPPLRRLLGTLKNDIAAGCGLADALRRHPRQFDSLYCNLVAVGEQTGCLDSLLDQLATLQEKRQAL
RARLKKAMVYPALVLLVGLGVAALLLLKVVPQFQAMFAGFGAPLPAFTQAVINLADWLGQYLLWVLGVMLATGFALRRAF
EREQAVRLWMLRQGLRMPVLGAVMQHAALARFARTLATSFSAGVPLTEALGPVAAACGNTLYEQAVLRLRQAIGNGLSMS
AAMRNEPLFPCLAVQMCAIGETSGTLDDMLDRIASHHETAVDEWLDNLASLLEPMIVLILGLVVGSLVVAMYLPIFQLGD
VI

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=727189 N0B28_RS22090 WP_275728772.1 4847482..4848690(+) (pilC) [Pseudomonas sp. SD17-1]
ATGAACCACAAGACAAAAACCTATGCCTGGCAAGGCATCGACCGCTCCGGCGCCCACGTGAGCGGGCACAGAAGCGGGCA
GAACAGTGCGCTGGTGAAGGCGCTGCTGCGCGGTCGCGGCATACGCCCTACCCAGGTGAACGCGGCACGCCGTATTACCC
TGCAATTGCCCGCTTCGCTCGGCGCCAAGGACATCACCCGCTTCAGCCGCCAGCTGGCAACGTTGTTCAAGGCCGGCGTG
CCGCTGCTGCAAGGGCTGGGCATGATCGCCGAAGGCATCAACAACCCACCGCTGCGCCGCCTGCTGGGCACCCTCAAAAA
CGATATCGCCGCCGGCTGCGGCCTGGCCGATGCGCTGCGCAGGCACCCGCGCCAGTTCGACAGCCTGTATTGCAACCTGG
TGGCCGTGGGTGAACAAACCGGCTGCCTGGACAGCCTGCTCGACCAGTTGGCAACGCTGCAGGAGAAACGCCAGGCGCTG
CGGGCCCGGCTGAAAAAGGCCATGGTCTACCCCGCGCTGGTGCTGCTGGTGGGGTTGGGGGTGGCGGCGCTGCTGTTGCT
CAAGGTGGTGCCGCAGTTTCAGGCCATGTTCGCAGGCTTCGGCGCGCCGTTGCCGGCCTTCACCCAGGCTGTCATCAACC
TGGCCGACTGGCTGGGGCAGTATCTGCTGTGGGTGCTTGGGGTAATGCTGGCCACGGGATTTGCCCTGCGCCGCGCCTTC
GAGCGTGAGCAGGCGGTGCGTTTGTGGATGTTGCGCCAGGGGCTGCGCATGCCGGTTCTGGGCGCAGTGATGCAGCATGC
GGCGCTGGCTCGTTTTGCGCGCACCCTGGCGACGTCGTTCAGTGCCGGCGTACCGCTCACCGAAGCCCTGGGGCCGGTGG
CCGCCGCGTGCGGCAATACGCTTTACGAGCAGGCCGTGCTGCGCCTGCGCCAGGCCATCGGCAACGGCCTGTCGATGAGC
GCGGCGATGCGCAACGAGCCGCTGTTCCCGTGCCTGGCGGTACAGATGTGCGCCATTGGCGAGACATCCGGCACGCTCGA
CGATATGCTCGACCGGATCGCCAGCCACCACGAAACGGCCGTCGACGAATGGCTCGACAACCTGGCCAGCCTGCTGGAGC
CGATGATCGTGCTGATTCTCGGGCTGGTGGTGGGCAGCCTGGTGGTCGCCATGTACCTGCCGATCTTCCAGCTGGGCGAT
GTGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(272-394)

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

47.891

100

0.48
  pilC Acinetobacter baylyi ADP1

45

99.502

0.448
  pilC Acinetobacter baumannii D1279779

43.719

99.005

0.433
  pilC Legionella pneumophila strain ERS1305867

43.142

99.751

0.43
  pilG Neisseria meningitidis 44/76-A

40.741

100

0.41
  pilC Vibrio campbellii strain DS40M4

41.147

99.751

0.41
  pilC Vibrio cholerae strain A1552

40.898

99.751

0.408
  pilG Neisseria gonorrhoeae MS11

40.247

100

0.405