NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	N0B28_RS22095	Genome accession	NZ_CP104044
Coordinates	4848693..4849562 (+)	Length	289 a.a.
NCBI ID	WP_275728775.1	Uniprot ID	-
Organism	Pseudomonas sp. SD17-1
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4843693..4854562

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N0B28_RS22070 (N0B28_22085)	-	4844499..4844591 (-)	93	Protein_4345	integrase	-
N0B28_RS22075 (N0B28_22090)	-	4845519..4846454 (-)	936	Protein_4346	site-specific integrase	-
N0B28_RS22085 (N0B28_22100)	-	4846837..4847265 (-)	429	WP_275728770.1	pilin	-
N0B28_RS22090 (N0B28_22105)	pilC	4847482..4848690 (+)	1209	WP_275728772.1	type II secretion system F family protein	Machinery gene
N0B28_RS22095 (N0B28_22110)	pilD	4848693..4849562 (+)	870	WP_275728775.1	A24 family peptidase	Machinery gene
N0B28_RS22100 (N0B28_22115)	coaE	4849559..4850182 (+)	624	WP_078479476.1	dephospho-CoA kinase	-
N0B28_RS22105 (N0B28_22120)	yacG	4850179..4850382 (+)	204	WP_043860325.1	DNA gyrase inhibitor YacG	-
N0B28_RS22110 (N0B28_22125)	-	4850379..4851068 (-)	690	WP_043860324.1	energy-coupling factor ABC transporter permease	-
N0B28_RS22115 (N0B28_22130)	-	4851198..4851827 (+)	630	WP_043860323.1	DUF1780 domain-containing protein	-
N0B28_RS22120 (N0B28_22135)	-	4851996..4852169 (+)	174	WP_043860322.1	DUF3094 family protein	-
N0B28_RS22125 (N0B28_22140)	-	4852260..4853555 (+)	1296	WP_236176793.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

Download Length: 289 a.a. Molecular weight: 32130.27 Da Isoelectric Point: 7.3446

                                >NTDB_id=727190 N0B28_RS22095 WP_275728775.1 4848693..4849562(+) (pilD) [Pseudomonas sp. SD17-1]

MDLFETLARQPLAYQCFALLLGLIVGSFINVLVHRLPMMLERQWRSEAREVLELPSPAEPRFDLMLPHSHCPHCQHRIRA

WENIPVLSYLCLRGRCSACKASISPRYPLVELACAGLGLFAAWHFGFSASAAAFMLLSWGLLAMSLIDIEHQLLPDVLVL

PLLWLGLILNAFEVFVPLDQALWGAVAGYLSLWTVYWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLASLVGA

LLGLVLLRLRNQQASTPIPFGPYLAIAGWIALLWGGQMTTSYLQFAGLQ

Nucleotide

Download Length: 870 bp

                                >NTDB_id=727190 N0B28_RS22095 WP_275728775.1 4848693..4849562(+) (pilD) [Pseudomonas sp. SD17-1]

ATGGACCTGTTCGAAACCCTGGCCCGCCAGCCGCTGGCCTACCAATGCTTCGCCCTGTTGCTTGGCCTGATTGTGGGCAG

CTTCATCAATGTACTGGTGCATCGCCTGCCAATGATGCTGGAGCGCCAATGGCGCAGTGAGGCCCGTGAAGTGCTGGAGC

TGCCCAGCCCGGCCGAGCCACGTTTCGACCTGATGCTGCCCCACTCCCACTGCCCGCACTGCCAGCACCGCATCCGCGCG

TGGGAGAACATCCCGGTGCTGAGTTACCTGTGCCTGCGCGGGCGCTGTTCGGCCTGCAAGGCATCGATCAGCCCGCGCTA

CCCACTGGTGGAGCTGGCCTGCGCAGGGCTTGGCCTGTTCGCGGCCTGGCATTTCGGCTTCAGCGCCAGCGCGGCGGCGT

TCATGCTGTTGAGCTGGGGCCTGCTGGCAATGAGCCTGATCGATATCGAGCATCAGTTGCTGCCCGATGTGCTGGTGCTG

CCGCTGCTGTGGCTGGGGCTGATACTCAATGCCTTCGAGGTGTTCGTGCCGCTGGACCAGGCGCTGTGGGGCGCCGTGGC

CGGCTACCTGAGCCTGTGGACGGTGTACTGGCTGTTCAAGCTGGTCACCGGCAAGGAGGGCATGGGCTATGGCGATTTCA

AGCTGCTGGCCATGCTCGGCGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACGCTGCTGCTGGCCTCGCTGGTGGGCGCG

CTGCTGGGCCTGGTACTGCTGCGCCTGCGCAACCAGCAGGCGAGCACGCCGATTCCGTTTGGGCCCTATCTGGCCATTGC

GGGCTGGATCGCGCTGCTCTGGGGTGGTCAAATGACCACTTCCTATCTGCAATTTGCCGGACTGCAATGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(135-244)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-125)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	53.147	98.962	0.526
pilD	Vibrio campbellii strain DS40M4	49.648	98.27	0.488
pilD	Acinetobacter baumannii D1279779	48.872	92.042	0.45
pilD	Acinetobacter nosocomialis M2	47.744	92.042	0.439
pilD	Neisseria gonorrhoeae MS11	47.843	88.235	0.422

Detailed information NTG0727190