Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   NZD48_RS06395 Genome accession   NZ_CP103964
Coordinates   1317409..1317729 (+) Length   106 a.a.
NCBI ID   WP_252547240.1    Uniprot ID   -
Organism   Staphylococcus hyicus strain MM2101     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1312409..1322729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NZD48_RS06365 (NZD48_06365) - 1313194..1313397 (+) 204 WP_259488489.1 YqgQ family protein -
  NZD48_RS06370 (NZD48_06370) - 1313394..1314380 (+) 987 WP_252538980.1 ROK family glucokinase -
  NZD48_RS06375 (NZD48_06375) - 1314382..1314693 (+) 312 WP_252538983.1 MTH1187 family thiamine-binding protein -
  NZD48_RS06380 (NZD48_06380) - 1314708..1315331 (+) 624 WP_252538986.1 MBL fold metallo-hydrolase -
  NZD48_RS06385 (NZD48_06385) comGA 1315387..1316361 (+) 975 WP_259488494.1 competence type IV pilus ATPase ComGA Machinery gene
  NZD48_RS06390 (NZD48_06390) comGB 1316330..1317397 (+) 1068 WP_259488496.1 competence type IV pilus assembly protein ComGB -
  NZD48_RS06395 (NZD48_06395) comGC 1317409..1317729 (+) 321 WP_252547240.1 competence type IV pilus major pilin ComGC Machinery gene
  NZD48_RS06400 (NZD48_06400) comGD 1317719..1318150 (+) 432 WP_259488499.1 competence type IV pilus minor pilin ComGD -
  NZD48_RS06405 (NZD48_06405) - 1318343..1318825 (+) 483 WP_259488501.1 competence type IV pilus minor pilin ComGF -
  NZD48_RS06410 (NZD48_06410) - 1318809..1319006 (+) 198 WP_039645590.1 hypothetical protein -
  NZD48_RS06415 (NZD48_06415) - 1318984..1319514 (+) 531 WP_107632993.1 shikimate kinase -
  NZD48_RS06420 (NZD48_06420) gcvT 1319669..1320760 (+) 1092 WP_259488504.1 glycine cleavage system aminomethyltransferase GcvT -
  NZD48_RS06425 (NZD48_06425) gcvPA 1320772..1322121 (+) 1350 WP_259488505.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11824.09 Da        Isoelectric Point: 9.5056

>NTDB_id=726652 NZD48_RS06395 WP_252547240.1 1317409..1317729(+) (comGC) [Staphylococcus hyicus strain MM2101]
MLKIINILKNKKGFTLIEMLLVLLIISVLLILIIPNIAKQSEHIQKTGCAAQLKLVDSQIEAYTLKYNRKPTSIDELIQE
GYIKDNQKNCKSGESITIRGGEAVVS

Nucleotide


Download         Length: 321 bp        

>NTDB_id=726652 NZD48_RS06395 WP_252547240.1 1317409..1317729(+) (comGC) [Staphylococcus hyicus strain MM2101]
ATGCTTAAGATCATTAATATATTAAAAAACAAAAAAGGGTTTACTTTAATCGAAATGTTATTAGTTTTACTCATCATTAG
TGTTTTATTAATATTAATAATTCCTAATATCGCAAAACAATCTGAGCACATTCAAAAGACTGGATGCGCGGCACAACTTA
AACTCGTAGATAGTCAAATTGAAGCTTATACTTTAAAATACAACCGTAAACCAACTTCAATTGATGAGCTAATTCAAGAA
GGATATATTAAAGATAATCAAAAAAACTGTAAAAGTGGGGAAAGTATCACAATTCGTGGTGGCGAAGCTGTTGTCTCATA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

67.961

97.17

0.66
  comGC Staphylococcus aureus MW2

67.961

97.17

0.66
  comGC Bacillus subtilis subsp. subtilis str. 168

44.792

90.566

0.406
  comGC/cglC Streptococcus mitis SK321

47.191

83.962

0.396
  comGC/cglC Streptococcus mitis NCTC 12261

47.191

83.962

0.396
  comGC/cglC Streptococcus pneumoniae R6

46.067

83.962

0.387
  comGC/cglC Streptococcus pneumoniae Rx1

46.067

83.962

0.387
  comGC/cglC Streptococcus pneumoniae TIGR4

46.067

83.962

0.387
  comGC/cglC Streptococcus pneumoniae D39

46.067

83.962

0.387
  comYC Streptococcus suis isolate S10

51.316

71.698

0.368