Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | NZD48_RS06385 | Genome accession | NZ_CP103964 |
| Coordinates | 1315387..1316361 (+) | Length | 324 a.a. |
| NCBI ID | WP_259488494.1 | Uniprot ID | - |
| Organism | Staphylococcus hyicus strain MM2101 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1310387..1321361
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NZD48_RS06350 (NZD48_06350) | rpmG | 1310919..1311083 (+) | 165 | WP_257053265.1 | 50S ribosomal protein L33 | - |
| NZD48_RS06355 (NZD48_06355) | - | 1311196..1311735 (+) | 540 | WP_259488487.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| NZD48_RS06360 (NZD48_06360) | - | 1311753..1313192 (+) | 1440 | WP_259488488.1 | rhomboid family intramembrane serine protease | - |
| NZD48_RS06365 (NZD48_06365) | - | 1313194..1313397 (+) | 204 | WP_259488489.1 | YqgQ family protein | - |
| NZD48_RS06370 (NZD48_06370) | - | 1313394..1314380 (+) | 987 | WP_252538980.1 | ROK family glucokinase | - |
| NZD48_RS06375 (NZD48_06375) | - | 1314382..1314693 (+) | 312 | WP_252538983.1 | MTH1187 family thiamine-binding protein | - |
| NZD48_RS06380 (NZD48_06380) | - | 1314708..1315331 (+) | 624 | WP_252538986.1 | MBL fold metallo-hydrolase | - |
| NZD48_RS06385 (NZD48_06385) | comGA | 1315387..1316361 (+) | 975 | WP_259488494.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| NZD48_RS06390 (NZD48_06390) | comGB | 1316330..1317397 (+) | 1068 | WP_259488496.1 | competence type IV pilus assembly protein ComGB | - |
| NZD48_RS06395 (NZD48_06395) | comGC | 1317409..1317729 (+) | 321 | WP_252547240.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| NZD48_RS06400 (NZD48_06400) | comGD | 1317719..1318150 (+) | 432 | WP_259488499.1 | competence type IV pilus minor pilin ComGD | - |
| NZD48_RS06405 (NZD48_06405) | - | 1318343..1318825 (+) | 483 | WP_259488501.1 | competence type IV pilus minor pilin ComGF | - |
| NZD48_RS06410 (NZD48_06410) | - | 1318809..1319006 (+) | 198 | WP_039645590.1 | hypothetical protein | - |
| NZD48_RS06415 (NZD48_06415) | - | 1318984..1319514 (+) | 531 | WP_107632993.1 | shikimate kinase | - |
| NZD48_RS06420 (NZD48_06420) | gcvT | 1319669..1320760 (+) | 1092 | WP_259488504.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 36985.87 Da Isoelectric Point: 7.2049
>NTDB_id=726651 NZD48_RS06385 WP_259488494.1 1315387..1316361(+) (comGA) [Staphylococcus hyicus strain MM2101]
MQLLIDHVVQYAITHEASDIHFIPNSSQVDVKLRIKDYLKPFDTLNLETYQKMLTLLKFKAGLDVSSRHKAQSGRYIYEY
ETLYYLRVSTLPLNLGNESCVIRITPQLFHTDINQTAYDIQKIMEKKQGLILFSGPTGAGKSTLMYQMVVYAKEKLNLNI
ITIEDPVEQLLNGVTQVSVNEKADITYGNSLKAILRCDPDVILIGEIRDGLIAKDVIQASLSGHLVLSTIHANDCKGVLL
RLIEMGITKQDLLQALNLIVNQRLITTNDNSRKLVYELMSQDDIRYFLDHNFVLPKHFESLNDKLTELKKKGEIDDVTLR
KYQK
MQLLIDHVVQYAITHEASDIHFIPNSSQVDVKLRIKDYLKPFDTLNLETYQKMLTLLKFKAGLDVSSRHKAQSGRYIYEY
ETLYYLRVSTLPLNLGNESCVIRITPQLFHTDINQTAYDIQKIMEKKQGLILFSGPTGAGKSTLMYQMVVYAKEKLNLNI
ITIEDPVEQLLNGVTQVSVNEKADITYGNSLKAILRCDPDVILIGEIRDGLIAKDVIQASLSGHLVLSTIHANDCKGVLL
RLIEMGITKQDLLQALNLIVNQRLITTNDNSRKLVYELMSQDDIRYFLDHNFVLPKHFESLNDKLTELKKKGEIDDVTLR
KYQK
Nucleotide
Download Length: 975 bp
>NTDB_id=726651 NZD48_RS06385 WP_259488494.1 1315387..1316361(+) (comGA) [Staphylococcus hyicus strain MM2101]
ATGCAATTATTAATTGACCATGTTGTACAATATGCCATAACACATGAAGCGTCGGACATTCATTTTATTCCGAACTCATC
ACAAGTCGATGTAAAGCTAAGAATTAAAGATTATTTAAAACCTTTTGACACATTAAATTTAGAGACGTATCAAAAAATGT
TAACATTATTAAAATTCAAGGCTGGTCTTGATGTATCTTCTAGACATAAAGCACAAAGTGGGCGTTATATCTATGAATAT
GAGACTTTATATTATTTACGTGTTTCAACATTACCATTAAATTTAGGCAATGAAAGTTGTGTCATTCGCATTACCCCGCA
ATTGTTTCACACTGATATTAATCAAACCGCTTATGACATACAAAAAATCATGGAAAAGAAACAAGGATTAATATTATTTA
GTGGTCCAACAGGTGCAGGCAAAAGTACATTAATGTATCAAATGGTGGTATACGCTAAAGAAAAACTCAACCTAAATATC
ATTACAATAGAAGATCCAGTTGAACAATTGCTAAATGGAGTAACACAAGTATCTGTAAATGAAAAAGCTGATATTACTTA
TGGAAATTCATTAAAAGCAATATTACGATGTGATCCAGATGTAATTTTAATTGGTGAAATAAGAGATGGTTTAATTGCAA
AAGATGTCATTCAAGCAAGTTTGAGTGGTCATTTAGTTTTATCGACTATACACGCAAATGATTGCAAAGGTGTATTATTA
CGCCTTATTGAAATGGGAATTACGAAACAAGACTTATTGCAAGCACTTAATCTTATAGTAAATCAGCGTTTAATTACGAC
AAATGACAATTCAAGGAAACTCGTTTATGAATTAATGTCTCAAGATGATATACGTTACTTTTTGGACCATAATTTTGTAC
TACCTAAACACTTTGAAAGTCTTAATGACAAACTGACTGAGCTAAAAAAGAAAGGAGAGATAGATGACGTCACATTACGA
AAATATCAAAAATAA
ATGCAATTATTAATTGACCATGTTGTACAATATGCCATAACACATGAAGCGTCGGACATTCATTTTATTCCGAACTCATC
ACAAGTCGATGTAAAGCTAAGAATTAAAGATTATTTAAAACCTTTTGACACATTAAATTTAGAGACGTATCAAAAAATGT
TAACATTATTAAAATTCAAGGCTGGTCTTGATGTATCTTCTAGACATAAAGCACAAAGTGGGCGTTATATCTATGAATAT
GAGACTTTATATTATTTACGTGTTTCAACATTACCATTAAATTTAGGCAATGAAAGTTGTGTCATTCGCATTACCCCGCA
ATTGTTTCACACTGATATTAATCAAACCGCTTATGACATACAAAAAATCATGGAAAAGAAACAAGGATTAATATTATTTA
GTGGTCCAACAGGTGCAGGCAAAAGTACATTAATGTATCAAATGGTGGTATACGCTAAAGAAAAACTCAACCTAAATATC
ATTACAATAGAAGATCCAGTTGAACAATTGCTAAATGGAGTAACACAAGTATCTGTAAATGAAAAAGCTGATATTACTTA
TGGAAATTCATTAAAAGCAATATTACGATGTGATCCAGATGTAATTTTAATTGGTGAAATAAGAGATGGTTTAATTGCAA
AAGATGTCATTCAAGCAAGTTTGAGTGGTCATTTAGTTTTATCGACTATACACGCAAATGATTGCAAAGGTGTATTATTA
CGCCTTATTGAAATGGGAATTACGAAACAAGACTTATTGCAAGCACTTAATCTTATAGTAAATCAGCGTTTAATTACGAC
AAATGACAATTCAAGGAAACTCGTTTATGAATTAATGTCTCAAGATGATATACGTTACTTTTTGGACCATAATTTTGTAC
TACCTAAACACTTTGAAAGTCTTAATGACAAACTGACTGAGCTAAAAAAGAAAGGAGAGATAGATGACGTCACATTACGA
AAATATCAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
57.585 |
99.691 |
0.574 |
| comGA | Staphylococcus aureus N315 |
57.585 |
99.691 |
0.574 |