Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NYR32_RS09805 Genome accession   NZ_CP103912
Coordinates   2057306..2058568 (-) Length   420 a.a.
NCBI ID   WP_065080583.1    Uniprot ID   -
Organism   Lactiplantibacillus plantarum strain SRCM210797     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2052306..2063568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR32_RS09790 (NYR32_09790) - 2053351..2054157 (-) 807 WP_003641506.1 TIGR00282 family metallophosphoesterase -
  NYR32_RS09795 (NYR32_09795) rny 2054282..2055841 (-) 1560 WP_065080582.1 ribonuclease Y -
  NYR32_RS09800 (NYR32_09800) recA 2056072..2057214 (-) 1143 WP_047673645.1 recombinase RecA Machinery gene
  NYR32_RS09805 (NYR32_09805) cinA 2057306..2058568 (-) 1263 WP_065080583.1 competence/damage-inducible protein A Machinery gene
  NYR32_RS09810 (NYR32_09810) pgsA 2058840..2059424 (-) 585 WP_003641502.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NYR32_RS09815 (NYR32_09815) - 2059447..2060319 (-) 873 WP_003641501.1 RodZ domain-containing protein -
  NYR32_RS09820 (NYR32_09820) yfmH 2060423..2061724 (-) 1302 WP_003644640.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  NYR32_RS09825 (NYR32_09825) yfmF 2061721..2062986 (-) 1266 WP_024002506.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45128.24 Da        Isoelectric Point: 5.4407

>NTDB_id=726556 NYR32_RS09805 WP_065080583.1 2057306..2058568(-) (cinA) [Lactiplantibacillus plantarum strain SRCM210797]
MQAEIIAVGTEILLGQITNTNSTYIARGLAELGIDSYYQTVVGDNRQRLSTVIEIAAQRNDLVILTGGLGPTKDDLTKQT
LAHYLNVALVEDQAAMQKITAWFATNDKVMTANNRLQALYPAGAQPLTNHNGMAVGALYQSENSADFLLLPGPPRELAVM
FDSEAKPKLAAAYGEQAQIYSRVMRFYGISESELATRLQPLIDEQQAVTIAPYAKTNEVTLRLSAQAMTETAARGMIDKV
DHQIKATIGPYFYGYGDDNSLVTTVINQMIAAKLSITAAESLTAGLFQSTIGSVSGVSAIFPGGFVTYANEAKHQLVNVP
QAIIDAEGVVSEATAKAMASGAKQQLNTDVGISFTGVAGPGTLEGQPAGTVWIGLAYRDRPVKAKQYHFAGNRQQIRERS
VMAGLDLLRHALNEDTDLKK

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=726556 NYR32_RS09805 WP_065080583.1 2057306..2058568(-) (cinA) [Lactiplantibacillus plantarum strain SRCM210797]
ATGCAAGCAGAAATAATCGCGGTTGGTACCGAGATTTTACTGGGTCAGATTACGAACACGAATAGTACGTACATCGCACG
TGGATTGGCCGAATTAGGAATTGATAGCTATTATCAAACGGTGGTTGGTGATAATCGGCAACGTTTGTCGACCGTCATTG
AAATTGCGGCCCAGCGGAATGACTTAGTTATTTTAACGGGTGGTTTGGGGCCGACCAAGGATGACTTGACGAAGCAGACG
CTCGCGCATTATTTGAATGTTGCCTTGGTTGAAGATCAGGCAGCAATGCAAAAAATTACGGCCTGGTTTGCCACTAATGA
CAAAGTAATGACGGCCAACAACCGATTACAGGCATTGTATCCGGCAGGCGCGCAACCGTTGACTAATCATAACGGAATGG
CTGTTGGTGCGCTTTATCAGTCAGAAAATAGTGCTGATTTCTTGTTATTGCCAGGTCCACCCCGTGAGTTAGCCGTAATG
TTTGATTCTGAGGCAAAACCGAAATTGGCAGCTGCATATGGGGAACAAGCCCAAATCTATTCGCGAGTGATGCGTTTTTA
TGGCATCAGTGAGTCTGAATTGGCGACCCGGTTGCAACCCTTGATTGATGAACAGCAGGCGGTTACGATTGCACCCTATG
CCAAGACTAACGAGGTTACCCTCAGATTAAGTGCCCAAGCTATGACGGAAACGGCTGCAAGGGGAATGATCGACAAAGTT
GACCACCAGATCAAGGCTACCATTGGGCCGTACTTTTACGGTTATGGAGACGATAACTCGTTAGTTACTACTGTTATTAA
TCAAATGATTGCGGCTAAGCTGAGTATTACAGCCGCTGAAAGCTTAACAGCTGGGCTGTTTCAGAGTACCATCGGCAGTG
TGTCCGGGGTCTCCGCAATCTTTCCGGGCGGCTTTGTAACGTATGCGAATGAGGCCAAACATCAGCTAGTGAACGTTCCA
CAAGCAATTATTGACGCTGAGGGCGTGGTTTCAGAAGCGACCGCTAAGGCCATGGCGAGTGGTGCTAAGCAGCAGCTAAA
TACTGATGTTGGTATCAGTTTTACAGGCGTTGCCGGTCCAGGAACCTTGGAAGGTCAACCGGCTGGAACGGTATGGATTG
GTCTTGCTTACCGTGATCGACCCGTGAAGGCCAAGCAGTACCATTTTGCTGGTAATCGACAACAAATTCGGGAACGCAGT
GTGATGGCCGGGTTAGACCTATTGAGACATGCATTGAATGAAGATACGGACTTAAAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(260-411)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

48.349

100

0.488
  cinA Streptococcus pneumoniae TIGR4

48.113

100

0.486
  cinA Streptococcus pneumoniae Rx1

48.113

100

0.486
  cinA Streptococcus pneumoniae R6

48.113

100

0.486
  cinA Streptococcus pneumoniae D39

47.877

100

0.483
  cinA Streptococcus mitis NCTC 12261

47.17

100

0.476
  cinA Streptococcus mutans UA159

47.952

98.81

0.474
  cinA Bacillus subtilis subsp. subtilis str. 168

44.552

98.333

0.438
  cinA Streptococcus suis isolate S10

39.423

99.048

0.39