Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NYR27_RS05225 Genome accession   NZ_CP103909
Coordinates   1145610..1146872 (+) Length   420 a.a.
NCBI ID   WP_013355708.1    Uniprot ID   -
Organism   Lactiplantibacillus plantarum strain SRCM210576     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1140610..1151872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR27_RS05205 (NYR27_05205) yfmF 1141192..1142457 (+) 1266 WP_003644641.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  NYR27_RS05210 (NYR27_05210) yfmH 1142454..1143755 (+) 1302 WP_003644640.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  NYR27_RS05215 (NYR27_05215) - 1143859..1144731 (+) 873 WP_003641501.1 RodZ domain-containing protein -
  NYR27_RS05220 (NYR27_05220) pgsA 1144754..1145338 (+) 585 WP_003641502.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NYR27_RS05225 (NYR27_05225) cinA 1145610..1146872 (+) 1263 WP_013355708.1 competence/damage-inducible protein A Machinery gene
  NYR27_RS05230 (NYR27_05230) recA 1146964..1148106 (+) 1143 WP_003641504.1 recombinase RecA Machinery gene
  NYR27_RS05235 (NYR27_05235) rny 1148337..1149896 (+) 1560 WP_003644638.1 ribonuclease Y -
  NYR27_RS05240 (NYR27_05240) - 1150021..1150827 (+) 807 WP_003641506.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45157.24 Da        Isoelectric Point: 5.6636

>NTDB_id=726446 NYR27_RS05225 WP_013355708.1 1145610..1146872(+) (cinA) [Lactiplantibacillus plantarum strain SRCM210576]
MQAEIIAVGTEILLGQITNTNSTYIARGLAELGIDSYYQTVVGDNRQRLSTVLEIAAQRNDLVILTGGLGPTKDDLTKQT
LAHYLNVALVEDQAAMQKITAWFATNDKVMTANNRLQALYPAGAQPLTNHNGMAVGAFYQSENSADFLLLPGPPRELAVM
FDSEAKPKLAAAYGEQAQIYSRVMRFYGISESELATRLHPLIDEQQAVTIAPYAKTNEVTLRLSAQAMTETAARGMIDKV
DHQIKATVGPYFYGYGDDNSLVTTVINQMIAAKLSITAAESLTAGLFQSTIGSVSGVSAIFPGGFVTYANEAKHQLVNVP
QAIIDAEGVVSEATAKAMASGAKQQLNTDVGISFTGVAGPGTLEGQPAGTVWIGLAYRDRPVKAKQYHFAGNRQQIRERS
VMAGLDLLRHALNEDTDLKK

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=726446 NYR27_RS05225 WP_013355708.1 1145610..1146872(+) (cinA) [Lactiplantibacillus plantarum strain SRCM210576]
ATGCAAGCAGAAATAATCGCGGTTGGTACCGAGATTTTACTGGGTCAGATTACGAACACGAACAGTACGTACATCGCACG
TGGATTGGCCGAATTAGGAATTGATAGCTATTATCAAACGGTGGTTGGTGATAATCGGCAACGTTTGTCGACCGTCCTTG
AAATTGCGGCCCAGCGGAATGACTTAGTTATTTTAACAGGTGGTTTGGGGCCGACCAAGGATGACTTGACGAAGCAGACA
CTCGCGCATTATTTGAATGTTGCCTTGGTTGAAGATCAGGCAGCAATGCAAAAAATTACGGCCTGGTTTGCCACTAATGA
CAAAGTAATGACGGCCAACAACCGATTGCAGGCATTGTATCCGGCAGGCGCGCAACCGTTGACTAATCATAACGGAATGG
CTGTTGGTGCGTTTTATCAGTCAGAAAATAGTGCTGATTTCTTGTTATTGCCAGGTCCACCCCGTGAGTTAGCCGTAATG
TTTGATTCTGAGGCAAAACCGAAATTGGCAGCTGCATATGGGGAACAAGCCCAAATCTATTCGCGAGTGATGCGTTTTTA
TGGCATCAGTGAGTCTGAATTGGCGACCCGGTTGCACCCCTTGATTGATGAACAGCAGGCGGTTACGATCGCACCCTATG
CCAAGACTAACGAGGTTACCCTCAGATTGAGTGCCCAAGCTATGACGGAAACGGCTGCAAGGGGAATGATCGACAAAGTT
GACCACCAGATCAAGGCTACCGTTGGGCCGTACTTTTACGGTTATGGAGACGATAACTCGTTAGTTACTACTGTTATTAA
TCAAATGATTGCGGCTAAGCTGAGTATTACAGCCGCGGAAAGCTTAACAGCTGGGCTGTTTCAGAGTACCATCGGCAGTG
TGTCCGGGGTCTCCGCAATCTTTCCGGGCGGCTTTGTAACGTATGCGAATGAGGCCAAACATCAGCTAGTGAACGTTCCA
CAAGCAATTATTGACGCTGAGGGCGTGGTTTCAGAAGCGACCGCTAAGGCCATGGCGAGTGGTGCTAAGCAGCAGCTAAA
TACTGATGTTGGTATCAGTTTTACAGGCGTTGCCGGTCCAGGAACCTTGGAAGGTCAACCGGCTGGAACGGTATGGATTG
GTCTTGCTTACCGTGATCGACCCGTGAAGGCCAAGCAGTACCATTTTGCTGGTAATCGACAACAAATTCGGGAACGCAGT
GTGATGGCCGGGTTAGACCTATTGAGACATGCATTGAATGAAGATACGGACTTAAAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(260-411)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

48.585

100

0.49
  cinA Streptococcus pneumoniae TIGR4

48.349

100

0.488
  cinA Streptococcus pneumoniae Rx1

48.349

100

0.488
  cinA Streptococcus pneumoniae R6

48.349

100

0.488
  cinA Streptococcus pneumoniae D39

48.113

100

0.486
  cinA Streptococcus mitis NCTC 12261

47.406

100

0.479
  cinA Streptococcus mutans UA159

48.193

98.81

0.476
  cinA Bacillus subtilis subsp. subtilis str. 168

44.31

98.333

0.436
  cinA Streptococcus suis isolate S10

39.663

99.048

0.393