Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   NYR30_RS00845 Genome accession   NZ_CP103875
Coordinates   169003..169326 (+) Length   107 a.a.
NCBI ID   WP_066111144.1    Uniprot ID   A0AB36E4U8
Organism   Gallibacterium salpingitidis strain FC22     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 164003..174326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR30_RS00830 (NYR30_00830) galU 164989..165879 (+) 891 WP_066111150.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  NYR30_RS00835 (NYR30_00835) glpT 166194..167651 (+) 1458 WP_066111148.1 glycerol-3-phosphate transporter -
  NYR30_RS00840 (NYR30_00840) glpQ 167723..168817 (+) 1095 WP_066111146.1 glycerophosphodiester phosphodiesterase -
  NYR30_RS00845 (NYR30_00845) comE1/comEA 169003..169326 (+) 324 WP_066111144.1 ComEA family DNA-binding protein Machinery gene
  NYR30_RS00850 (NYR30_00850) fis 169428..169724 (-) 297 WP_065234168.1 DNA-binding transcriptional regulator Fis -
  NYR30_RS00855 (NYR30_00855) dusB 169752..170726 (-) 975 WP_066111142.1 tRNA dihydrouridine synthase DusB -
  NYR30_RS00860 (NYR30_00860) - 171049..174105 (+) 3057 WP_302501552.1 glycoside hydrolase family 2 TIM barrel-domain containing protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 11547.41 Da        Isoelectric Point: 7.1661

>NTDB_id=726332 NYR30_RS00845 WP_066111144.1 169003..169326(+) (comE1/comEA) [Gallibacterium salpingitidis strain FC22]
MKLKHFLLLVCGSLSMLLSPLSIAATETTNSPEQVQPVAVQSDKVNLNTATAEQLQKGLVGIGAKKAQAIVEYREQHGAF
TAIEQLTEVKGIGTAILEKNKERMTVE

Nucleotide


Download         Length: 324 bp        

>NTDB_id=726332 NYR30_RS00845 WP_066111144.1 169003..169326(+) (comE1/comEA) [Gallibacterium salpingitidis strain FC22]
ATGAAGCTAAAGCATTTTTTATTGTTAGTTTGTGGTTCTTTATCTATGTTGTTATCGCCGTTGTCCATCGCAGCAACAGA
AACAACAAATTCACCAGAGCAAGTACAGCCTGTGGCAGTACAAAGTGATAAGGTAAATTTAAATACTGCTACGGCGGAGC
AATTGCAAAAAGGCTTAGTTGGTATTGGAGCGAAAAAAGCACAAGCAATTGTGGAGTATCGTGAACAACATGGTGCTTTT
ACCGCTATTGAACAGCTAACTGAAGTAAAAGGAATTGGTACAGCAATTCTTGAAAAGAATAAGGAGAGAATGACGGTAGA
ATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(40-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

51.351

100

0.533
  comEA/comE1 Glaesserella parasuis strain SC1401

56.977

80.374

0.458
  comEA Vibrio cholerae strain A1552

43.269

97.196

0.421
  comEA Vibrio cholerae C6706

43.269

97.196

0.421
  comEA Vibrio campbellii strain DS40M4

41.414

92.523

0.383
  comEA Vibrio parahaemolyticus RIMD 2210633

41.414

92.523

0.383
  comEA Legionella pneumophila strain ERS1305867

39.796

91.589

0.364
  comEA Legionella pneumophila str. Paris

39.796

91.589

0.364
  comEA Acinetobacter baylyi ADP1

45.882

79.439

0.364