Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NYR89_RS08700 Genome accession   NZ_CP103833
Coordinates   1828271..1829425 (-) Length   384 a.a.
NCBI ID   WP_279445499.1    Uniprot ID   -
Organism   Actinobacillus arthritidis strain CCUG24862     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1823271..1834425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR89_RS08685 (NYR89_08685) - 1824358..1824630 (+) 273 WP_279445496.1 PTS sugar transporter subunit IIB -
  NYR89_RS08690 (NYR89_08690) - 1824644..1826002 (+) 1359 WP_279445497.1 PTS ascorbate transporter subunit IIC -
  NYR89_RS08695 (NYR89_08695) - 1826221..1828227 (+) 2007 WP_279445498.1 oligopeptide transporter, OPT family -
  NYR89_RS08700 (NYR89_08700) dprA 1828271..1829425 (-) 1155 WP_279445499.1 DNA-processing protein DprA Machinery gene
  NYR89_RS08705 (NYR89_08705) def 1829610..1830122 (+) 513 WP_279445500.1 peptide deformylase -
  NYR89_RS08710 (NYR89_08710) - 1830145..1831590 (+) 1446 WP_279445501.1 ATP-binding protein -
  NYR89_RS08715 (NYR89_08715) rfaD 1831643..1832569 (+) 927 WP_279445502.1 ADP-glyceromanno-heptose 6-epimerase -
  NYR89_RS08720 (NYR89_08720) - 1832767..1834017 (-) 1251 WP_279446670.1 surface lipoprotein assembly modifier -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42981.48 Da        Isoelectric Point: 5.6501

>NTDB_id=725808 NYR89_RS08700 WP_279445499.1 1828271..1829425(-) (dprA) [Actinobacillus arthritidis strain CCUG24862]
MPQIALLKLLQIPQLGARRIARLLSEVDFAQFCQYDKCQLQQIGWNEKQIQRWFNPEMRWIESALAWAEQPNQHLLSLFD
EEYPFLLRQISTAPPVLFVRGSVSSLSLPQIAIVGSRDFSAYGEYWACYFSEQLIKHHLAVTSGLAIGIDGFCHQRAVAE
RGITIAVLGSGLDQVYPARHKKLAEQIIESGGALVSEFFPNQPPLAENFPRRNRIISGLSLGTLVVEATLNSGTLITARY
ALEQGREVFALPNSVQNPYAQGCHKLIKEGALLTETIEDILQAIQYQLPDQPRQQVLFEPQQAVEKAPFFAKADVPNKNN
HLAKKLPELTACQQQIVEHIGLDPISIDELAKAISLEVETLLVELLDLELLNVIKQVSGGYVRQ

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=725808 NYR89_RS08700 WP_279445499.1 1828271..1829425(-) (dprA) [Actinobacillus arthritidis strain CCUG24862]
ATGCCACAAATCGCTTTACTGAAATTACTACAAATTCCGCAACTAGGGGCGCGACGAATAGCTCGTCTGTTGTCCGAAGT
GGATTTTGCCCAATTTTGCCAATATGACAAATGTCAATTACAACAAATAGGTTGGAACGAGAAACAGATTCAACGCTGGT
TCAATCCGGAAATGCGTTGGATTGAGAGCGCATTAGCGTGGGCGGAACAACCGAATCAACATTTATTGAGCTTATTTGAT
GAGGAATATCCGTTTTTATTACGGCAAATCAGCACCGCACCACCGGTGTTATTTGTCAGAGGTTCTGTAAGCAGTTTGAG
TTTACCGCAAATTGCGATTGTTGGTAGCCGAGATTTTTCTGCCTATGGAGAATATTGGGCATGCTATTTTAGCGAGCAAC
TGATTAAACATCATTTGGCGGTAACCAGCGGACTTGCGATCGGTATAGACGGCTTTTGTCATCAGCGAGCGGTAGCGGAA
CGGGGTATTACGATTGCTGTGCTGGGTAGCGGTTTAGATCAAGTCTATCCGGCAAGACACAAAAAATTGGCGGAACAGAT
TATTGAAAGCGGCGGGGCGTTGGTGTCGGAATTTTTCCCGAATCAACCGCCGCTTGCCGAGAATTTTCCTCGTCGTAATC
GGATTATCAGCGGTTTATCACTTGGTACATTAGTGGTGGAAGCTACATTAAATAGTGGCACGCTGATTACCGCTCGTTAT
GCGTTGGAGCAAGGGCGAGAAGTTTTTGCACTTCCTAATTCGGTACAAAACCCGTATGCACAAGGCTGTCATAAATTGAT
CAAAGAAGGAGCACTTTTAACTGAGACGATAGAGGATATTTTACAGGCGATTCAATATCAACTGCCGGATCAGCCTCGGC
AACAGGTGCTGTTTGAGCCGCAACAAGCGGTCGAAAAAGCCCCATTTTTTGCAAAAGCTGATGTGCCGAATAAGAACAAT
CATCTTGCAAAAAAATTGCCGGAATTGACCGCTTGTCAGCAACAAATTGTGGAACATATCGGTCTTGATCCGATTTCGAT
TGATGAGTTGGCAAAGGCGATTTCATTAGAAGTGGAAACGCTATTAGTCGAGTTACTTGATTTAGAATTGTTGAATGTAA
TTAAGCAGGTAAGTGGTGGCTATGTCAGACAATAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(325-380)

DNA recombination-mediator protein A (DNA_processg_A)

(69-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

73.879

98.698

0.729
  dprA Haemophilus influenzae Rd KW20

50.287

90.625

0.456
  dprA Vibrio campbellii strain DS40M4

45.026

99.479

0.448
  dprA Vibrio cholerae strain A1552

41.969

100

0.422
  dprA Neisseria gonorrhoeae MS11

38.095

98.438

0.375
  dprA Legionella pneumophila strain ERS1305867

37.337

99.74

0.372
  dprA Neisseria gonorrhoeae strain FA1090

37.566

98.438

0.37
  dprA Neisseria meningitidis MC58

38.187

94.792

0.362
  dprA Neisseria meningitidis strain C311

38.187

94.792

0.362