Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   PY372_RS02540 Genome accession   NZ_CP119301
Coordinates   542728..543456 (-) Length   242 a.a.
NCBI ID   WP_323710004.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain LC     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 537728..548456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY372_RS02515 (PY372_02515) trpR 538115..538426 (+) 312 WP_005497218.1 trp operon repressor -
  PY372_RS02520 (PY372_02520) yjjX 538475..539008 (-) 534 WP_021451172.1 inosine/xanthosine triphosphatase -
  PY372_RS02525 (PY372_02525) pheA 539033..540211 (-) 1179 WP_005468591.1 prephenate dehydratase -
  PY372_RS02530 (PY372_02530) hpf 540455..540781 (-) 327 WP_005468590.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  PY372_RS02535 (PY372_02535) - 541112..542593 (-) 1482 WP_323710003.1 lytic transglycosylase F -
  PY372_RS02540 (PY372_02540) comL 542728..543456 (-) 729 WP_323710004.1 outer membrane protein assembly factor BamD Machinery gene
  PY372_RS02545 (PY372_02545) rluD 543593..544570 (+) 978 WP_193239053.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PY372_RS02550 (PY372_02550) pgeF 544572..545300 (+) 729 WP_140357312.1 peptidoglycan editing factor PgeF -
  PY372_RS02555 (PY372_02555) clpC 545448..548021 (+) 2574 WP_005460310.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27889.84 Da        Isoelectric Point: 5.8151

>NTDB_id=725670 PY372_RS02540 WP_323710004.1 542728..543456(-) (comL) [Vibrio parahaemolyticus strain LC]
MKRQTLTGLLAISLLFGCASKEEIVPDVPPSELYADAQVSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFSIDRSDRDPEPVKKAFDDFKKLLQRYPNSPYAED
AQKRMVALKNRLANYDLATADFYLRREAWIAAINRNQELQKSFPDTEAARKSLEIQLEAYKQLQLEDAVARTEALIKLNP
VK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=725670 PY372_RS02540 WP_323710004.1 542728..543456(-) (comL) [Vibrio parahaemolyticus strain LC]
ATGAAACGTCAGACTTTAACAGGCCTTTTAGCGATATCTCTTCTGTTTGGATGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCGGAACTGTATGCAGACGCACAAGTCTCACTTCAAAGTGGCAACTGGCTTTCTGCGATTGAGAAACTGG
AAGCGTTAGACTCACGTTACCCATTTGGTGCCTACTCTGAACAGGTGCAACTTGACCTTATTTACGCATACTACAAAAAC
GACGACCTAGCGTTAGGCTTAGCAACCATCTCTCGCTTTATGCGCCTAAACCCTACCCATGAAAAAATGGACTGGGTGCT
TTACATGCGTGGCCTGAGCCACATGGCTCAAGATCGTAACTTTATGCACGACCTGTTTAGCATCGATCGTAGCGACCGCG
ACCCAGAGCCCGTGAAAAAAGCATTTGATGACTTTAAGAAGCTGCTTCAACGTTATCCAAACAGCCCATATGCGGAAGAT
GCACAAAAACGCATGGTGGCCTTGAAAAACCGCTTAGCGAATTACGATTTAGCTACCGCTGATTTTTACCTTCGCCGTGA
AGCCTGGATCGCAGCCATTAACCGTAACCAAGAGCTTCAAAAATCATTCCCTGATACAGAAGCTGCTCGCAAATCGTTAG
AAATTCAGCTGGAAGCCTACAAGCAGCTGCAACTAGAAGATGCCGTTGCAAGAACAGAAGCGCTCATTAAGCTAAATCCT
GTCAAATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

40.408

100

0.409
  comL Neisseria gonorrhoeae MS11

40

100

0.405