Detailed information NTG0725672

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: NYR82_RS05005
• Genome accession: NZ_CP103827
• Coordinates: 1087906..1089285 (+)
• Length: 459 a.a.
• NCBI ID: WP_279442712.1
• Uniprot ID: -
• Organism: Actinobacillus equuli subsp. haemolyticus strain 3090
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1082906..1094285

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NYR82_RS04975 (NYR82_04980)	yacG	1083192..1083380 (-)	189	WP_115589824.1	DNA gyrase inhibitor YacG	-
NYR82_RS04980 (NYR82_04985)	coaE	1083362..1084000 (-)	639	WP_279442707.1	dephospho-CoA kinase	-
NYR82_RS04985 (NYR82_04990)	-	1084022..1084696 (-)	675	WP_279442708.1	prepilin peptidase	-
NYR82_RS04990 (NYR82_04995)	pilC	1084696..1085889 (-)	1194	WP_279442709.1	type II secretion system F family protein	Machinery gene
NYR82_RS04995 (NYR82_05000)	pilB	1085882..1087267 (-)	1386	WP_279442710.1	GspE/PulE family protein	Machinery gene
NYR82_RS05000 (NYR82_05005)	pilA	1087288..1087725 (-)	438	WP_279442711.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
NYR82_RS05005 (NYR82_05010)	radA	1087906..1089285 (+)	1380	WP_279442712.1	DNA repair protein RadA	Machinery gene
NYR82_RS05010 (NYR82_05015)	pepB	1089351..1090638 (+)	1288	Protein_976	aminopeptidase PepB	-
NYR82_RS05015 (NYR82_05020)	-	1090766..1091701 (+)	936	WP_279442713.1	KpsF/GutQ family sugar-phosphate isomerase	-
NYR82_RS05020 (NYR82_05025)	greB	1091711..1092199 (+)	489	WP_005611555.1	transcription elongation factor GreB	-
NYR82_RS05025 (NYR82_05030)	ribE	1092287..1092748 (-)	462	WP_279442714.1	6,7-dimethyl-8-ribityllumazine synthase	-
NYR82_RS05030 (NYR82_05035)	-	1092823..1094028 (-)	1206	WP_279442715.1	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	-

Sequence

Protein

• Length: 459 a.a.
• Molecular weight: 49636.31 Da
• Isoelectric Point: 8.1788

>NTDB_id=725672 NYR82_RS05005 WP_279442712.1 1087906..1089285(+) (radA) [Actinobacillus equuli subsp. haemolyticus strain 3090]
MAKAPKTAYVCNDCGAEYSRRMGQCKECKAWNTISEVRLISSKESSKNDRFSGYAGETSGKVQTLSEISLQEVPRFSSGF
NELDRVLGGGVVPGSAILIGGHPGAGKSTLLLQVMCGLSKMLPTLYVTGEESLQQVAMRANRLGLPTDNLKMLSETSVEH
ICNIADQEKPKLMVIDSIQVMHLSDIQSSPGSVAQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDASL
LLEGESDSRFRTLRSQKNRFGAVNELGVFAMTEQGLREVKNPSAIFLSRSDELVSGSSVMVLWEGTRPLLVEIQAPVDHS
MLANPRRVAVGLDHNRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALISSFRNRPLPQDLVIFGEVG
LAGEIRPVPSGQERISEAAKHGFKRAIVPFGNMPKKPIKDMEVIGVKKLSDALDALGNL

Nucleotide

• Length: 1380 bp

>NTDB_id=725672 NYR82_RS05005 WP_279442712.1 1087906..1089285(+) (radA) [Actinobacillus equuli subsp. haemolyticus strain 3090]
ATGGCAAAAGCACCGAAAACGGCTTACGTATGTAATGATTGCGGCGCAGAATATTCTCGCCGGATGGGACAATGCAAAGA
GTGCAAAGCATGGAATACGATTAGTGAAGTTCGCTTAATCTCTAGTAAAGAATCAAGCAAAAATGACCGCTTCAGCGGTT
ATGCAGGAGAGACATCAGGCAAGGTACAAACACTTTCCGAAATCAGCTTACAAGAAGTGCCTCGTTTTAGTAGTGGGTTT
AATGAGCTTGATCGTGTACTCGGCGGTGGCGTGGTTCCCGGTTCAGCTATTCTCATCGGGGGACATCCCGGTGCAGGAAA
ATCGACACTATTACTGCAAGTGATGTGCGGCTTATCAAAAATGCTACCGACACTCTATGTCACCGGTGAAGAATCATTAC
AACAGGTTGCAATGCGTGCTAATCGTTTAGGACTACCAACTGATAATCTGAAAATGCTTTCGGAAACATCTGTCGAACAT
ATTTGCAATATTGCCGACCAAGAAAAACCTAAATTAATGGTAATTGACTCTATTCAAGTGATGCATTTATCCGATATTCA
ATCCTCGCCGGGTTCTGTTGCTCAAGTACGAGAATGCGCATCATTTCTTACCCGCTATGCCAAAACACGCCAAGTGGCAA
TTATTATGGTCGGTCACGTCACCAAAGACGGTACGCTTGCCGGCCCAAAAGTGTTGGAACACGCTATTGATGCCTCATTA
TTGCTAGAAGGTGAATCTGATTCACGTTTCAGAACATTACGAAGCCAAAAAAACCGATTTGGTGCGGTAAATGAACTTGG
CGTGTTTGCTATGACTGAACAAGGTTTGCGAGAAGTTAAAAATCCATCCGCTATTTTTTTAAGCCGTAGTGATGAATTGG
TTTCAGGCAGTTCTGTTATGGTACTTTGGGAGGGGACTCGCCCATTATTAGTCGAAATTCAAGCGCCGGTTGATCATTCT
ATGCTTGCAAATCCACGTCGTGTGGCTGTCGGTTTAGATCATAATCGCTTATCGCTCTTACTTGCCGTACTCCACCGCCA
TGGTGGGCTACAAATGTCTGACCAAGATGTTTTTGTTAACGTTGTTGGGGGCGTAAAAGTAACGGAAACCAGTGCTGATC
TCGCTTTAATTTTGGCACTGATATCAAGTTTTAGAAATCGTCCGTTGCCACAAGACTTAGTGATCTTTGGTGAAGTGGGC
CTTGCCGGTGAAATCCGTCCGGTACCGAGCGGCCAAGAGCGTATTAGCGAAGCGGCAAAACACGGTTTTAAACGTGCGAT
TGTACCGTTTGGTAATATGCCGAAAAAACCGATAAAAGATATGGAAGTGATTGGGGTTAAAAAATTAAGTGATGCACTAG
ATGCGCTCGGTAATTTATAA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (347-432)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (9-36)

• AAA domain (AAA_25) (83-224)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	48.578	99.564	0.484
radA	Streptococcus mitis NCTC 12261	44.615	99.129	0.442
radA	Streptococcus pneumoniae Rx1	44.396	99.129	0.44
radA	Streptococcus pneumoniae D39	44.396	99.129	0.44
radA	Streptococcus pneumoniae R6	44.396	99.129	0.44
radA	Streptococcus pneumoniae TIGR4	44.396	99.129	0.44
radA	Streptococcus mitis SK321	44.396	99.129	0.44