Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NYR82_RS04990 Genome accession   NZ_CP103827
Coordinates   1084696..1085889 (-) Length   397 a.a.
NCBI ID   WP_279442709.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 3090     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1079696..1090889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR82_RS04960 (NYR82_04965) lptE 1081488..1081982 (+) 495 WP_279442705.1 LPS assembly lipoprotein LptE -
  NYR82_RS04965 (NYR82_04970) - 1081987..1082133 (-) 147 WP_278225056.1 hypothetical protein -
  NYR82_RS04970 (NYR82_04975) holA 1082090..1083115 (+) 1026 WP_279442706.1 DNA polymerase III subunit delta -
  NYR82_RS04975 (NYR82_04980) yacG 1083192..1083380 (-) 189 WP_115589824.1 DNA gyrase inhibitor YacG -
  NYR82_RS04980 (NYR82_04985) coaE 1083362..1084000 (-) 639 WP_279442707.1 dephospho-CoA kinase -
  NYR82_RS04985 (NYR82_04990) - 1084022..1084696 (-) 675 WP_279442708.1 prepilin peptidase -
  NYR82_RS04990 (NYR82_04995) pilC 1084696..1085889 (-) 1194 WP_279442709.1 type II secretion system F family protein Machinery gene
  NYR82_RS04995 (NYR82_05000) pilB 1085882..1087267 (-) 1386 WP_279442710.1 GspE/PulE family protein Machinery gene
  NYR82_RS05000 (NYR82_05005) pilA 1087288..1087725 (-) 438 WP_279442711.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NYR82_RS05005 (NYR82_05010) radA 1087906..1089285 (+) 1380 WP_279442712.1 DNA repair protein RadA Machinery gene
  NYR82_RS05010 (NYR82_05015) pepB 1089351..1090638 (+) 1288 Protein_976 aminopeptidase PepB -

Sequence

Protein


Download         Length: 397 a.a.        Molecular weight: 44849.40 Da        Isoelectric Point: 9.6289

>NTDB_id=725669 NYR82_RS04990 WP_279442709.1 1084696..1085889(-) (pilC) [Actinobacillus equuli subsp. haemolyticus strain 3090]
MVSIFEFHWKAKNRFQQKQSGILLAQNHAEAEQKLLAKGYQDIRIQRNFAFARQPKADEITQFIAQLALLINASIPFKQA
LMMQQENCTNIKLYQWLLALNAAVTSGYSFSASLAKLGCYFSKQEIQLIRIGEQSGKLGTVLDNLAKTRSQSEKLTKKVR
KIMFYPLIVLVISCVLTLGLLVFIVPQFADLYMDKAQNLPWLTSLLFSLSAFLRQNGIFLCCSGIVAMGMLLCFAKKFGN
LTACQMRLLSYIPFFNQVIRYTRIIFFTQSLALMLSAHLHLEVALNAFLSEKMHDRLLQQQVQLTLSLLKQGYKFSEGLN
PAVFTSQVVQMIAIGEKSANLAVMCTQISDIYQLKLDYQIDLLSQLLEPILMLLMGIIIGTVLIGLYLPIFDLGVLV

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=725669 NYR82_RS04990 WP_279442709.1 1084696..1085889(-) (pilC) [Actinobacillus equuli subsp. haemolyticus strain 3090]
ATGGTTAGTATTTTTGAATTTCACTGGAAAGCGAAGAATCGGTTCCAACAAAAACAAAGCGGTATTTTATTAGCCCAAAA
TCATGCTGAGGCAGAGCAAAAGCTCTTGGCAAAAGGCTATCAAGATATTCGTATTCAACGCAATTTTGCTTTTGCTCGAC
AGCCTAAAGCAGATGAAATTACTCAATTTATTGCGCAATTAGCATTATTGATTAACGCTTCCATTCCTTTTAAACAAGCG
TTAATGATGCAGCAGGAAAATTGTACGAATATTAAATTATATCAGTGGCTACTTGCTTTGAATGCTGCTGTGACATCCGG
ATATAGTTTTTCTGCAAGTTTAGCGAAATTAGGGTGTTATTTTTCTAAGCAAGAAATCCAATTAATTCGTATTGGTGAAC
AAAGTGGTAAATTAGGTACTGTTTTGGATAATCTTGCTAAAACACGTAGCCAGTCCGAAAAATTAACGAAAAAAGTTAGA
AAAATTATGTTTTATCCGCTGATTGTGTTAGTCATTTCATGTGTATTGACTCTAGGGCTGTTAGTATTCATTGTGCCTCA
ATTTGCCGACTTATATATGGATAAAGCACAAAATTTACCATGGCTAACGTCATTATTGTTTTCTCTCTCTGCGTTTCTAC
GACAAAATGGGATATTCCTATGCTGTAGCGGTATAGTAGCAATGGGGATGTTGCTCTGTTTTGCAAAAAAATTCGGAAAT
TTGACCGCTTGTCAGATGCGTCTTTTGTCTTATATTCCCTTCTTTAATCAAGTTATTCGCTATACACGAATTATATTCTT
TACTCAGAGTTTGGCGTTAATGTTAAGTGCCCATCTGCATTTAGAGGTTGCCCTAAACGCTTTTTTATCTGAGAAAATGC
ACGATCGACTTTTACAACAACAAGTACAGCTTACGTTATCTTTATTAAAACAGGGGTATAAATTTTCGGAAGGATTAAAC
CCGGCTGTATTCACTTCGCAAGTAGTACAAATGATAGCAATAGGGGAGAAAAGTGCTAATTTAGCGGTGATGTGTACGCA
GATTAGCGATATTTATCAGCTGAAATTAGATTATCAAATAGATTTGCTTTCACAATTACTTGAGCCGATTTTAATGCTAC
TTATGGGGATTATTATTGGCACGGTTTTAATTGGGCTTTATTTGCCGATTTTTGACTTAGGGGTTCTCGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(267-389)

Type II secretion system (T2SS), protein F (T2SSF)

(63-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Glaesserella parasuis strain SC1401

48.111

100

0.481
  pilC Haemophilus influenzae Rd KW20

39.25

100

0.395
  pilC Haemophilus influenzae 86-028NP

39

100

0.393