Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   PY824_RS07290 Genome accession   NZ_CP119172
Coordinates   1370921..1371619 (+) Length   232 a.a.
NCBI ID   WP_100262150.1    Uniprot ID   -
Organism   Streptococcus macedonicus strain SGM CIP105683     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1365921..1376619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY824_RS07270 (PY824_07270) - 1368422..1368583 (-) 162 WP_000794682.1 lacticin 481 family lantibiotic -
  PY824_RS07275 (PY824_07275) - 1369048..1369203 (-) 156 WP_000410306.1 lacticin 481 family lantibiotic -
  PY824_RS07280 (PY824_07280) - 1369232..1369387 (-) 156 WP_000410306.1 lacticin 481 family lantibiotic -
  PY824_RS07285 (PY824_07285) - 1369631..1370806 (+) 1176 WP_115265897.1 IS256-like element IS1191 family transposase -
  PY824_RS07290 (PY824_07290) scnR 1370921..1371619 (+) 699 WP_100262150.1 response regulator transcription factor Regulator
  PY824_RS07295 (PY824_07295) - 1371636..1372997 (+) 1362 WP_001019996.1 sensor histidine kinase KdpD -
  PY824_RS07300 (PY824_07300) - 1373077..1374942 (-) 1866 WP_014294852.1 SAG1250 family conjugative relaxase -
  PY824_RS07305 (PY824_07305) - 1374929..1375294 (-) 366 WP_100262151.1 MobC family plasmid mobilization relaxosome protein -
  PY824_RS07310 (PY824_07310) - 1375304..1375663 (-) 360 WP_014621298.1 SAG1252 family conjugative relaxosome accessory protein -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26045.02 Da        Isoelectric Point: 7.1342

>NTDB_id=725440 PY824_RS07290 WP_100262150.1 1370921..1371619(+) (scnR) [Streptococcus macedonicus strain SGM CIP105683]
MNFETQFLNKRILIIDDDVSLSQSIKEVLVNRGFKNISNAYSISEGIDIFSVSKIDFIILDVMLPDGEGYLLAKYVRKTS
DIPILFLTAKNNSDDEVKGLGSGGDDFVTKPFLPKTLIYRIIALLRRAYKNESELITLSSCTIDLNNASVNKNGNQLSLT
PTEIQILRKLYSNKNYIVSTETICDTIWGLDSSGYEKSLMVHIRNIREKIESSPSKPDHLITVKGLGYKLVV

Nucleotide


Download         Length: 699 bp        

>NTDB_id=725440 PY824_RS07290 WP_100262150.1 1370921..1371619(+) (scnR) [Streptococcus macedonicus strain SGM CIP105683]
ATGAATTTTGAAACACAGTTTTTAAACAAACGGATATTAATAATAGATGACGATGTCTCACTTAGTCAATCTATCAAAGA
GGTATTAGTCAATAGAGGATTTAAAAATATTAGTAACGCTTATAGTATTAGCGAGGGCATTGATATTTTTTCTGTATCCA
AGATTGATTTCATCATATTAGATGTAATGTTACCTGATGGTGAGGGGTATTTACTTGCCAAATATGTTAGAAAAACTTCT
GATATTCCAATATTATTTTTAACAGCAAAAAATAATTCTGATGATGAAGTTAAAGGCCTTGGATCAGGTGGTGATGATTT
TGTCACTAAACCATTTCTCCCGAAAACCTTAATATATCGTATCATTGCTCTATTAAGAAGAGCATACAAAAATGAATCCG
AATTAATTACATTGTCTTCTTGTACCATTGATTTAAATAATGCAAGTGTAAATAAAAATGGAAATCAACTTTCACTAACT
CCTACTGAAATACAGATACTACGAAAACTATACAGTAATAAGAACTACATTGTTTCAACAGAAACAATTTGTGATACTAT
TTGGGGACTTGATAGTTCTGGATATGAAAAGTCATTAATGGTACACATTCGAAATATAAGAGAAAAAATAGAATCAAGCC
CTTCTAAACCGGATCATCTTATTACCGTTAAAGGTCTTGGATATAAGCTTGTTGTCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(12-121)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

41.593

97.414

0.405
  vicR Streptococcus mutans UA159

37.118

98.707

0.366
  micA Streptococcus pneumoniae Cp1015

36.522

99.138

0.362